Nanopublication

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ID

https://w3id.org/np/RA0bZxhkxoAakZPhG9_yyB-5hq0d5r8pAeQD-LFBOR2k4

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RA0bZxhkxoAakZPhG9_yyB-5hq0d5r8pAeQD-LFBOR2k4> .
@prefix sub: <https://w3id.org/np/RA0bZxhkxoAakZPhG9_yyB-5hq0d5r8pAeQD-LFBOR2k4/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix mvikg: <http://example.org/mvikg/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sosa: <http://www.w3.org/ns/sosa/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:variant a <http://purl.obolibrary.org/obo/SO_0000694>, biolink:SequenceVariant;
    mvikg:alt "T";
    mvikg:effect "silent (synonymous) mutation, no amino acid change";
    mvikg:evidenceText "The sefA insert was found to contain one silent mutation (456G>T) compared to the sequence X98516 published on GenBank";
    mvikg:ref "G";
    dct:isPartOf <https://w3id.org/spaces/mvikg/r/kg>;
    rdfs:comment "456G>T";
    rdfs:label "PMC3094208-Salmonella_enterica_serotype_Enteritidis-variant1";
    biolink:start_coordinate "456"^^xsd:integer .
  
  <https://www.ncbi.nlm.nih.gov/gene/17779192> a biolink:Gene;
    sosa:isFeatureOfInterestOf <https://w3id.org/np/RAnIePiIv4gwvd1y-HUnVmM0fKEGMbA4PkNjmy9EBRSd4/sample>;
    biolink:has_sequence_variant sub:variant .
}

sub:provenance {
  sub:assertion prov:wasDerivedFrom <https://w3id.org/mvikg/abox#VARIANT-VAR_001-17779192> .
}

sub:pubinfo {
  this: dct:created "2026-11-09T20:51:13Z"^^xsd:dateTime;
    dct:creator orcid:0009-0005-5515-1230;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType npx:ExampleNanopub;
    npx:introduces sub:variant;
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA-yPZEYODCS39dWOWm7NA_ClOGFHzPi8iYhLzoZf19GI>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA4o9JqSxNO2Z47itbAcxvpVfdR97t_7usxmdR90URXQs>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAnlONjGChImRjDeXxTwrTmndhfv1guES7EnXlp1CaE3g/templateVersion> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB";
    npx:hasSignature "dPiXiK0xDvR59evG61yjis615ydH/mDm5klw97pUNXv90Y1NYzsLyzRqoIKciR1dF+DXByRXCu/5gHNlRZ+qSK4TiQtRf4++maauZytzYkv4ovld087I7Tbf8s2B0KeuQNycFWT0+GRA/h6sVKMEZ/u6qx2STVfo2JfIYW8pY9qvPUDgoq+c0bm0rhx5t3viyeitkl7H7p9y2e9CU8GmWd3zQjVBypyOCdcdCBpOyLsdZpYgu4NPF4nRpmwKgbUaSQwwLbu/VAF6zJZm7jepu8tzroXsu1/FvFbMS+3eX/F98yxZ1tTPLxmTxKG4bmvzncF9whJcvbxvDbkJtOx1HQ==";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0009-0005-5515-1230 .
}