EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe
Economy, business and finance/Economic sector/Computing and information technology/Wireless technology
This Research Object aggregates all the resources needed for running Galaxy EODIE: i) Examples of input datasets needed for running EODIE on Galaxy; ii) Galaxy Workflow (.ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
Anne Foilloux, and Samantha Wittke. "EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe." ROHub. Mar 11 ,2022. https://doi.org/10.24424/4fpx-ks69.
Nordic e-Infrastructure Collaboration (NeIC)
This Python Jupyter Notebook load this Research Object, update it e.g. add additional metadata information and fill its content. It also show the area of interest by visualizing the Sentinel-2 tile and the parccel shapefile where NDVI is calculated with EODIE Galaxy Tool.
Jupyter Notebook to update Research Object and visualize area of interest
This input dataset is a shapefile corresponding the the area of interest e.g. on which statistics such as NDVI will be computed.
This is a link to Workflow Research Object stored in workflowhub.eu. It contains a Galaxy workflow (.ga), abstract CWL (.cwl) and diagram (.png).
Abstract CWL Automatically generated from the Galaxy workflow file: Workflow constructed from history 'EODIE Sentinel'
Abstract CWL figure for EODIE Galaxy Tool
This output is the logfile generated when running EODIE Galaxy Tool over the specified geographical area (test_parcels_32635) and with the input Sentinel-2 dataset.
This output dataset is a csv file containing NDVI values computed over the specific geographical area e.g. given by the input shapefile called 'test_parcels_32635'.
Tarball containing the EODIE source code release 1.0.2 and its associated documentation.
Source code of EODIE version 1.0.2 (zenodo)
This input dataset corresponds to the Sentinel-2 tile shapefile, originally provided by https://fromgistors.blogspot.com/2016/10/how-to-identify-sentinel-2-granule.html,
Link to the Galaxy Tool shed for EODIE Galaxy Tool repository. This repository is useful whenever you want to install EODIE Galaxy Tool in your own Galaxy instance. The version used in this example is revision: 0:81b0ca76435d
Galaxy Toolshed for EODIE Galaxy Tool repository
Sentinel2 input data. This input dataset corresponds to the data itself while sentinel2_tiles_world would be the corresponding shapefile for the tile.
This Galaxy history contains all the inputs and generated outputs for this EODIE example. If you have an account on Galaxy Europe (if not you can open one), you can import this history and reuse it.
This Research Object aggregates all the resources needed for running Galaxy EODIE: i) Examples of input datasets needed for running EODIE on Galaxy; ii) Galaxy Workflow (ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
Science and technology/Technology and engineering/IT-computer sciences
EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe.