[ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/pubinfo", "@graph": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-07T20:21:25Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/embeds": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/templateVersion" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/template" } ], "http://purl.org/nanopub/x/supersedes": [ { "@id": "https://w3id.org/np/RA_NDDx6ZeyCNCNhGxlFShlKPswjIbGzvGzqwOaUCLw5A" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Declaring an MVIKG sample context" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "https://w3id.org/np/RA-yPZEYODCS39dWOWm7NA_ClOGFHzPi8iYhLzoZf19GI" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "https://w3id.org/np/RA4o9JqSxNO2Z47itbAcxvpVfdR97t_7usxmdR90URXQs" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "https://w3id.org/np/RAgeON_vGgJCt5E4DPMi0eOPaGwNv9tbfFTRZtBwdQL0w" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "H5FiG2w/9EbNXkLs8uJ2ae0bnhMhSDBwzsWG1p0q3ypIjN1v5GU7PFoFtPjkwfCoFKbHw/LeYUfHRMpz2aRPRONqfwAgR4zFo9XMdGfMgmfcpXOIWjHBJ7DwT+x+e5fHqfiwSXEWy5Aq8W4cUKsRLywZ7sg4K8H0IOWO61Pbr5LeIZpwY6eCUxtutkM1Wq8z5MfsCgh2HBNxS2j1V48nlZuzNfCos55rJj6JYxsiJITDMiKHpX5e5ceB8oRFk64KyikJRPtz3CxfOMbx9O8BhICxRO50XxW1c5iUpUvU5Ch7gv/eRygGzyZhSf6dlWIKqhL1QHfErF6eOYEE/EddiA==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/provenance", "@graph": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/Head", "@graph": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/assertion", "@graph": [ { "@id": "http://example.org/mvikg/has_biome", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has biome" } ] }, { "@id": "http://purl.org/dc/dcmitype/Dataset", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "dataset" } ] }, { "@id": "http://purl.org/dc/terms/isPartOf", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is part of" } ] }, { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is a" } ] }, { "@id": "http://www.w3.org/ns/sosa/Sample", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "sample" } ] }, { "@id": "https://w3id.org/biolink/vocab/in_taxon", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "in taxon" } ] }, { "@id": "https://w3id.org/biolink/vocab/mentions", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "mentions" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/biome", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the biome the taxon was sampled from (GOLD biome recommended)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/ols4/api/select?ontology=gold&fieldList=iri,label,description&q=" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/project", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the PMC article/dataset that mentions this sample (search by title, PMC ID or PMID)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/europepmc/webservices/rest/search?format=json&query=" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/sample", "@type": [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "this sample" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st01", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://www.w3.org/ns/sosa/Sample" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/sample" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st02", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/spaces/mvikg/r/kg" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://purl.org/dc/terms/isPartOf" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/sample" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st03", "@type": [ "https://w3id.org/np/o/ntemplate/GroupedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st04" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st05" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st04", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/sample" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/mentions" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/project" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/dc/dcmitype/Dataset" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/project" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st06", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/in_taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/sample" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/taxon", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the organism taxon the sample belongs to (NCBITaxon)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/ols/api/select?ontology=ncbitaxon&fieldList=iri,label,description&q=" } ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st07", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/biome" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://example.org/mvikg/has_biome" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/taxon" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/templateVersion", "http://purl.org/dc/terms/description": [ { "@value": "Declaring an MVIKG sample context (PMC article/dataset, taxon, biome), independent of any one gene -- a sample can have many genes observed in it. To be referenced by gene-variant observations, phenotype observations, and antibiogram observations." } ], "http://purl.org/dc/terms/isVersionOf": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/template" } ], "@type": [ "https://w3id.org/np/o/ntemplate/AssertionTemplate", "https://w3id.org/np/o/ntemplate/UnlistedTemplate" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Declaring an MVIKG sample context" } ], "https://w3id.org/kpxl/gen/terms/governedBy": [ { "@id": "https://w3id.org/spaces/mvikg" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern": [ { "@value": "this sample" } ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st01" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st02" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st03" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st04" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st05" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st06" }, { "@id": "https://w3id.org/np/RA8sjjlcxhaaPhXbINiQybCYMpBibyGxD-6amKCtg-kuI/st07" } ], "https://w3id.org/np/o/ntemplate/hasTag": [ { "@value": "Biology" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType": [ { "@id": "http://www.w3.org/ns/sosa/Sample" } ] } ] } ]