@prefix this: <https://w3id.org/np/RA9iyfDnwac6ulrDF4X1n6JH6QZjWDIoDiIYxs6K_PRfY> .
@prefix sub: <https://w3id.org/np/RA9iyfDnwac6ulrDF4X1n6JH6QZjWDIoDiIYxs6K_PRfY/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dcmitype: <http://purl.org/dc/dcmitype/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix orcid: <https://orcid.org/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix mvikg: <http://example.org/mvikg/> .
@prefix gen: <https://w3id.org/kpxl/gen/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix sosa: <http://www.w3.org/ns/sosa/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  mvikg:has_biome rdfs:label "has biome" .
  
  dcmitype:Dataset rdfs:label "dataset" .
  
  dcterms:isPartOf rdfs:label "is part of" .
  
  rdf:type rdfs:label "is a" .
  
  sosa:Sample rdfs:label "sample" .
  
  sosa:isSampleOf rdfs:label "is sample of" .
  
  biolink:in_taxon rdfs:label "in taxon" .
  
  sub:biome a nt:ExternalUriPlaceholder, nt:GuidedChoicePlaceholder;
    rdfs:label "the biome the taxon was sampled from (GOLD biome recommended)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols4/api/select?ontology=gold&fieldList=iri,label,description&q=" .
  
  sub:organism a nt:EmbeddedResource, nt:LocalResource;
    rdfs:label "the strain/organism this sample was taken from" .
  
  sub:project a nt:ExternalUriPlaceholder, nt:GuidedChoicePlaceholder;
    rdfs:label "the PMC article/dataset this record is derived from (search by title, PMC ID or PMID)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/europepmc/webservices/rest/search?format=json&query=" .
  
  sub:sample a nt:IntroducedResource, nt:LocalResource;
    rdfs:label "this sample" .
  
  sub:st01 rdf:object sosa:Sample;
    rdf:predicate rdf:type;
    rdf:subject sub:sample .
  
  sub:st02 a nt:GroupedStatement, nt:OptionalStatement;
    nt:hasStatement sub:st03, sub:st04 .
  
  sub:st03 rdf:object sub:project;
    rdf:predicate dcterms:isPartOf;
    rdf:subject sub:sample .
  
  sub:st04 rdf:object dcmitype:Dataset;
    rdf:predicate rdf:type;
    rdf:subject sub:project .
  
  sub:st05 rdf:object sub:organism;
    rdf:predicate sosa:isSampleOf;
    rdf:subject sub:sample .
  
  sub:st06 rdf:object sub:taxon;
    rdf:predicate biolink:in_taxon;
    rdf:subject sub:organism .
  
  sub:st07 a nt:OptionalStatement;
    rdf:object sub:biome;
    rdf:predicate mvikg:has_biome;
    rdf:subject sub:taxon .
  
  sub:taxon a nt:ExternalUriPlaceholder, nt:GuidedChoicePlaceholder;
    rdfs:label "the organism taxon the strain belongs to (NCBITaxon)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ncbitaxon&fieldList=iri,label,description&q=" .
  
  sub:templateVersion a nt:AssertionTemplate, nt:UnlistedTemplate;
    dcterms:description "Declaring an MVIKG sample context (PMC article/dataset, strain/organism, taxon, biome), independent of any one gene -- a sample can have many genes observed in it. To be referenced by gene-variant-phenotype observations.";
    dcterms:isVersionOf <https://w3id.org/np/RATGV5msKoOdwc3jgCfgitsSGzAN-tWoqk3oGOYlB8rB0/template>;
    rdfs:label "Declaring an MVIKG sample context";
    gen:governedBy <https://w3id.org/spaces/mvikg>;
    nt:hasNanopubLabelPattern "this sample";
    nt:hasStatement sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06, sub:st07;
    nt:hasTag "Biology";
    nt:hasTargetNanopubType sosa:Sample .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0009-0005-5515-1230 .
}

sub:pubinfo {
  orcid:0000-0002-1267-0234 foaf:name "Tobias Kuhn" .
  
  this: dcterms:created "2026-11-11T05:57:23+00:00"^^xsd:dateTime;
    dcterms:creator orcid:0000-0002-1267-0234;
    dcterms:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:embeds sub:templateVersion;
    npx:introduces <https://w3id.org/np/RATGV5msKoOdwc3jgCfgitsSGzAN-tWoqk3oGOYlB8rB0/template>;
    rdfs:label "Declaring an MVIKG sample context";
    skos:changeNote "Corrects the template links in the publication info, with the template itself unchanged: the earlier version named the assertion templates for making provenance and publication info templates (RA-yPZEY..., RA4o9JqS...) as its own provenance and publication info templates. It now names the ones actually used (Attributed to myself/others; License, Creator, Change note, Derived) and the meta-template by its embedded IRI.";
    prov:wasDerivedFrom <https://w3id.org/np/RATGV5msKoOdwc3jgCfgitsSGzAN-tWoqk3oGOYlB8rB0>;
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA-N4_kFxcruvBTlo1yJv29E4SLOXsx5KO_th69PprMrA>,
      <https://w3id.org/np/RA7NZ9N1vb-mbTo6pOyR14fdbQ8PpFtJHTY3UBPb6vMh4>, <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
      <https://w3id.org/np/RAKc76yHLDbloE6ObluzYQsfX37v6qrZXbYeIKpe8-YUo>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAgeON_vGgJCt5E4DPMi0eOPaGwNv9tbfFTRZtBwdQL0w/templateVersion> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB";
    npx:hasSignature "r9pp9C33YqY3FLg3S+lXI7DkUZ10npt8vZi+iv+DjzibdueIv/p502k95CGC9b5+3hDtkSoOL2CRlwmT9os+ulXXywREZNUMgpJGtaNOfQEyxl4XHGVkNk0G9lGoYSMUSd/vJYcL7boUAbKC17r7DjEtHfQLU9xBTJtZa7dMWmg=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0002-1267-0234 .
}