[ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#Head", "@graph": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#pubinfo", "@graph": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "nzwTm/xtzFkXxFF4ikv0Z0BKaWX3VUj6YcWguhFTPGUyk1q/bhczgThBdYjJQumPmMR1CL26ID3e6f8Ro/fSXo3Fh5nwZeM+Dvertin0LS5AffGz5xgrvUFInSo3w+In9bukuzq+uzFq2BAYrBClATj8m3I22f3gEsEW/AKkfbA=" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM", "http://purl.org/dc/terms/created": [ { "@value": "2023-08-25T07:56:39.197Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/supersedes": [ { "@id": "http://purl.org/np/RAAcvfFgDFl4Q-MSH3XEMjUxipfgY6SyjS9MfwPTP7NuY" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Template: Expressing an association between a taxon and a nucleotide sequence" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM" }, { "@id": "http://purl.org/np/RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90" }, { "@id": "http://purl.org/np/RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "http://purl.org/np/RAJwu5sVubRqXY4t2gkSoGxWkMyZqnpkGTCPiTlmvi4so" } ] } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#provenance", "@graph": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ] } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#assertion", "@graph": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#assertion", "http://purl.org/dc/terms/description": [ { "@value": "

Such a nanopublication expresses an association between an organism taxon and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies a given taxon concept.

" } ], "@type": [ "https://w3id.org/np/o/ntemplate/AssertionTemplate" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Expressing an association between a taxon and a nucleotide sequence" } ], "https://w3id.org/np/o/ntemplate/hasDefaultProvenance": [ { "@id": "http://purl.org/np/RAYfEAP8KAu9qhBkCtyq_hshOvTAJOcdfIvGhiGwUqB-M" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern": [ { "@value": "${taxonname} - is identified by nucleotide sequence - ${nucleotidesequence}" } ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st00" }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st05" }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st09" }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st11" }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st12" }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st39" }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st90" } ], "https://w3id.org/np/o/ntemplate/hasTag": [ { "@value": "Biodiversity" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/BiodivNanopub" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st00", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToNucleotideSequenceAssociation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#association" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/predicate" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#association" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st09", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#association" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st11", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxonname" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonName" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxon" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st12", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxondef" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxon" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st39", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#nucleotidesequence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/object" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#association" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#st90", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/2000/01/rdf-schema#comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/o/ntemplate/ASSERTION" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#association", "@type": [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "this association" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#comment", "@type": [ "https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "short explanation related to the above statement" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#nucleotidesequence", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "INSDC / Genbank accession number (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToNucleotideSequenceAssociation", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "association of a taxon to a nucleotide sequence" } ] }, { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is an instance of" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "'is identified by nucleotide sequence'" } ] }, { "@id": "https://w3id.org/biolink/vocab/predicate", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "refers to the relation" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxon", "@type": [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the taxon concept" } ] }, { "@id": "https://w3id.org/biolink/vocab/subject", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "refers to" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxonname", "@type": [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://vodex.petapico.org/nidx/query?rows=100&q=label:" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonName", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the name - links a taxon usage to a taxon name" } ] }, { "@id": "http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#taxondef", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" } ], "https://w3id.org/np/o/ntemplate/hasRegex": [ { "@value": "(https://doi.org/|https://treatment.plazi.org/id/).+" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is used as defined in" } ] }, { "@id": "https://w3id.org/biolink/vocab/object", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "links the organism to the nucleotide sequence" } ] }, { "@id": "http://www.w3.org/2000/01/rdf-schema#comment", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the free-text comment" } ] } ] } ]