Nanopublication

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ID

https://w3id.org/np/RAFI-RgOeDnAtYjwQr6WZXZTq9Zw-sawvlMCBEAuXDtfs

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAFI-RgOeDnAtYjwQr6WZXZTq9Zw-sawvlMCBEAuXDtfs> .
@prefix sub: <https://w3id.org/np/RAFI-RgOeDnAtYjwQr6WZXZTq9Zw-sawvlMCBEAuXDtfs/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix mvikg: <http://example.org/mvikg/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sosa: <http://www.w3.org/ns/sosa/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/np/RAdPFleoF2lqRiDI7Nv9ICmiOkVzbGaRVz0mHmyw14suA/phenotype> a biolink:PhenotypicFeature;
    mvikg:comparedTo "wild-type S. Typhimurium 12023/LT2";
    mvikg:isAssociatedWithVariant <https://w3id.org/np/RA_CvFq8xqODYIpo_NrYBgrjawd0vqCjayLt0TyBCccGM/variant>;
    dct:isPartOf <https://w3id.org/spaces/mvikg/r/kg>;
    rdfs:comment "phoP mutant bacteria showed almost no replication in RAW264.7 macrophages (mean ~1 division over 16 h vs. ~100-fold increase, 0.46 generations/h, for wild-type), and higher killing indices (0.16 generations/h loss) in both RAW264.7 and BMM";
    rdfs:label "PMC3167890-S._Typhimurium_LT2_phoP_null_mutant-phenotype2";
    sosa:isResultOf <https://w3id.org/np/RA8-bcgNHzty-3bdUqEaZSnWuP-J-UPW8bmcXSdeaYeJE/sample> .
}

sub:provenance {
  sub:assertion prov:wasDerivedFrom <https://w3id.org/mvikg/abox#GENE-P0DM78-inRecsalmonella_batch_0023-29> .
}

sub:pubinfo {
  this: dct:created "2026-11-10T10:34:58Z"^^xsd:dateTime;
    dct:creator orcid:0009-0005-5515-1230;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType npx:ExampleNanopub;
    npx:introduces <https://w3id.org/np/RAdPFleoF2lqRiDI7Nv9ICmiOkVzbGaRVz0mHmyw14suA/phenotype>;
    npx:supersedes <https://w3id.org/np/RALv1loXu3bZ94jIhJIOHMYPHD_0WlI8YoNWiDPwzuG6k>;
    skos:changeNote "Adds the change note that was missing from the immediately preceding version (which corrected the provenance/pubinfo template links and stabilized npx:introduces).";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RAHKGU7g81YLKWl0S7g0oKdiRD5LhcPFMjVkAgLnipR_g>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA-N4_kFxcruvBTlo1yJv29E4SLOXsx5KO_th69PprMrA>,
      <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>, <https://w3id.org/np/RAKc76yHLDbloE6ObluzYQsfX37v6qrZXbYeIKpe8-YUo>,
      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAR0BDV3XFKzSqviAGWtP_qnWTlYxMbCDQ0YYGbsbfdt4/templateVersion> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB";
    npx:hasSignature "Dah+LvHReynwNNTYZXt1+Sbn0xum5rg2Q9bpm0KfEtlcLlGdO5t2UeeldEjJi/cyeHMzTqOULifXt5BIa45M6na9ygm6fe6zCGBOVI5iYT1BR98+DxYmhr8nlo03IiflRM6NnPHwTjFHIzKYuLMnUzHT3VCEppEUKiHhqwjIucZyxxe4EZgonKAwuAxp7KAN3dIf2hP5/CeHUe1umOSpPtdkpvTxLv+XueWNmX0+xH7s4oObCau+Cb76hlDOXHO7BAtfQIN07BPbS4aHUdNRDoajFdBJ54Zvjnmny098CzHP8pGN7jP5LLN533Yga3CTkbG4JVnOKBJDOjvul+/HQQ==";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0009-0005-5515-1230 .
}