@prefix this: <https://w3id.org/np/RAGCuZ_3Olb7gTIqVZ8omd0a9QNpBaDokcDe_L8my6Azc> .
@prefix sub: <https://w3id.org/np/RAGCuZ_3Olb7gTIqVZ8omd0a9QNpBaDokcDe_L8my6Azc/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <http://qudt.org/schema/qudt/hasQuantity> rdfs:label "has quantity" .
  
  <http://softeng.polito.it/rsctx#hasTemperature> rdfs:label "has temperature in °C" .
  
  rdf:type rdfs:label "is an instance of" .
  
  <https://nanodash.knowledgepixels.com/part?id=https://w3id.org/spaces/biodiversity/r/ontology/sample&context=https://w3id.org/spaces/biodiversity/r/ontology&label=Sample>
    rdfs:label "Sample" .
  
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation" .
  
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
  
  <https://w3id.org/biolink/vocab/timepoint> rdfs:label "has the timepoint" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates> rdfs:label "has the decimal degree location coordinates" .
  
  sub:assertion a nt:AssertionTemplate, nt:UnlistedTemplate;
    dct:description "Declares the collection of small representative quantities of biological material or environmental material containing biological material for a specific purpose.";
    rdfs:label "Declaring the collection of a sample";
    nt:hasNanopubLabelPattern "${sampling} ${targetMaterial} in ${location}";
    nt:hasStatement sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06, sub:st07,
      sub:st21, sub:st22, sub:st23, sub:st24, sub:st30, sub:st31, sub:st32;
    nt:hasTag "naturalProducts" .
  
  sub:association a nt:IntroducedResource, nt:LocalResource .
  
  sub:coordinates a nt:LiteralPlaceholder;
    rdfs:label "lat/long(optional altitude), e.g. +47.37+8.54+400.5";
    nt:hasRegex "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" .
  
  sub:ecosystem a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the type of ecosystem of sampling location (ENVO ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&q=" .
  
  sub:environmentMaterial a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the type of environmental sample (ENVO ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&q=" .
  
  sub:location a nt:LocalResource;
    rdfs:label "sampling location" .
  
  sub:permit a nt:ValuePlaceholder;
    rdfs:label "specify the permit ID or URL" .
  
  sub:purpose a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the purpose of sampling (MESH ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=mesh&q=" .
  
  sub:quantity a nt:LiteralPlaceholder;
    rdfs:label "specify the quantity of sample in grams";
    nt:hasDatatype xsd:positiveInteger .
  
  sub:sampling a nt:LocalResource;
    rdfs:label "sampling activity" .
  
  sub:st01 rdf:object <https://nanodash.knowledgepixels.com/part?id=https://w3id.org/spaces/biodiversity/r/ontology/sample&context=https://w3id.org/spaces/biodiversity/r/ontology&label=Sample>;
    rdf:predicate rdf:type;
    rdf:subject sub:association .
  
  sub:st02 rdf:object sub:sampling;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
    rdf:subject sub:association .
  
  sub:st03 rdf:object sub:targetMaterial;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st04 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:environmentMaterial;
    rdf:predicate rdf:type;
    rdf:subject sub:targetMaterial .
  
  sub:st05 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:tissueMaterial;
    rdf:predicate rdf:type;
    rdf:subject sub:targetMaterial .
  
  sub:st06 rdf:object sub:quantity;
    rdf:predicate <http://qudt.org/schema/qudt/hasQuantity>;
    rdf:subject sub:targetMaterial .
  
  sub:st07 a nt:OptionalStatement;
    rdf:object sub:taxonname;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName>;
    rdf:subject sub:targetMaterial .
  
  sub:st21 rdf:object sub:location;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st22 rdf:object sub:coordinates;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates>;
    rdf:subject sub:location .
  
  sub:st23 rdf:object sub:ecosystem;
    rdf:predicate rdf:type;
    rdf:subject sub:location .
  
  sub:st24 a nt:OptionalStatement;
    rdf:object sub:temperature;
    rdf:predicate <http://softeng.polito.it/rsctx#hasTemperature>;
    rdf:subject sub:location .
  
  sub:st30 rdf:object sub:timepoint;
    rdf:predicate <https://w3id.org/biolink/vocab/timepoint>;
    rdf:subject sub:association .
  
  sub:st31 a nt:OptionalStatement;
    rdf:object sub:permit;
    rdf:predicate <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPermit>;
    rdf:subject sub:association .
  
  sub:st32 rdf:object sub:purpose;
    rdf:predicate <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPurpose>;
    rdf:subject sub:association .
  
  sub:targetMaterial a nt:LocalResource;
    rdfs:label "sample material" .
  
  sub:taxonname a nt:GuidedChoicePlaceholder;
    rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)";
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
  
  sub:temperature a nt:LiteralPlaceholder;
    rdfs:label "specify the temperature of the sampling location in °C";
    nt:hasDatatype xsd:decimal .
  
  sub:timepoint a nt:LiteralPlaceholder;
    rdfs:label "XSD DateTime format (2023-03-30T22:17:11Z)";
    nt:hasRegex "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" .
  
  sub:tissueMaterial a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the type of tissue sample (BTO ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=bto&q=" .
  
  <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPermit> rdfs:label "has a sampling permit" .
  
  <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPurpose> rdfs:label "has sampling purpose" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0001-6534-6609 .
}

sub:pubinfo {
  orcid:0000-0001-6534-6609 foaf:name "Mitja M. Zdouc" .
  
  this: dct:created "2026-09-22T15:12:25.888Z"^^xsd:dateTime;
    dct:creator orcid:0000-0001-6534-6609;
    dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
    npx:embeds sub:assertion;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
    rdfs:label "Declaring the collection of a sample";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
      <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RA9cOdAwjxTF6qNNFkXTl_EgOan0LDPmu0fWnIgmZu-7E/template> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAnj9AmTE2Q7RxppglmQDLGezpd8yHXSVP7AqgUhyZ36SjaTCdhOlYhCIapxtat5RBYFjIQ5OreKs7GRf29kXtKqAsBR4skDZ10RviKdb52YvZEC+r1CsqOOuMCpG8fQhIWiD53PonxeeyjL9RXWFh1n4lGQ+Bo8qhIQQKgjEHnpwOgb+rLSg1V/K0j6DDW21ScOC1w1FGn+rgf2U3f0jnr9/EL8wV6uhUsRmVyPQF5YqoYsu1e10cxoXO3A63BZFg6GYeUWBenxlSo/8ZIM0Q/mk3Rt6W46aj9srX9o6KyQotN1Hux6QkgtG6usCaQEHr0g37Ip6NMPScT/rTfu3fZwIDAQAB";
    npx:hasSignature "O+Crth1AyPojAXtQtXH4LhMiLwqOGdcK3UIOwJk5pcj2aMegagwc0D/zr4jNwDUU5uG8inom9H7QfGRRAn1cJKnXhgq7yAds0MU4gr0gEJEvCLgKlVBJ54RS1xgmdv3ur8/sv8f2ARxCiz8T3tsfkesRC3vBDzhmx+uEqFBzOpsk5SvSPNTQQ9XmTARh4yydG1Leuqr1lBUHRlr46ko3Mkn41xK+OGstp4FagKr45RelNIDL+4reA/nEMsqC88uZ2hbqNodnEggDR0Eavv9wfJTyP29Spqxk7JaGodQL3gi2HjE3CNyitdNhe8nMaHsApVesJTHXZOzAY2Bls1KBqw==";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0001-6534-6609 .
}