[ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/provenance", "@graph": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/assertion", "@graph": [ { "@id": "http://example.org/mvikg/comparedTo", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "compared to" } ] }, { "@id": "http://example.org/mvikg/isAssociatedWithVariant", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is associated with variant" } ] }, { "@id": "http://purl.org/dc/terms/isPartOf", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is part of" } ] }, { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is a" } ] }, { "@id": "http://www.w3.org/2000/01/rdf-schema#comment", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "comment" } ] }, { "@id": "http://www.w3.org/2000/01/rdf-schema#label", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "label" } ] }, { "@id": "http://www.w3.org/ns/sosa/isResultOf", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is result of" } ] }, { "@id": "https://w3id.org/biolink/vocab/PhenotypicFeature", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "phenotypic feature" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/comparedTo", "@type": [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "compared to (the baseline/control the phenotype outcome was compared against)" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype", "@type": [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "this phenotype observation" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotypeDescription", "@type": [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "phenotype description (prose, e.g. \"DeltarfaH mutant elicited ROS production...\")" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotypeName", "@type": [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "short name/identifier of this phenotype observation" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/sample", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the sample this phenotype was observed in (declared via the sample-context template)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://w3id.org/np/l/nanopub-query-1.1/api/RAom4OoQ8U2K6A629YRXKo9-XU-ZJM7-KZs1h11OD6c1w/find-things?type=http://www.w3.org/ns/sosa/Sample" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st01", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/sample" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/ns/sosa/isResultOf" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st02", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/spaces/mvikg/r/kg" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://purl.org/dc/terms/isPartOf" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st03", "@type": [ "https://w3id.org/np/o/ntemplate/GroupedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st04" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st04", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/variant" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://example.org/mvikg/isAssociatedWithVariant" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/variant", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the specific sequence variant this phenotype is tied to, if known (declared via the gene-variant template)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://w3id.org/np/l/nanopub-query-1.1/api/RAom4OoQ8U2K6A629YRXKo9-XU-ZJM7-KZs1h11OD6c1w/find-things?type=https://w3id.org/biolink/vocab/SequenceVariant" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/biolink/vocab/PhenotypicFeature" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st06", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotypeName" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/2000/01/rdf-schema#label" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st06b", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotypeDescription" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/2000/01/rdf-schema#comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st07", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/comparedTo" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://example.org/mvikg/comparedTo" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/phenotype" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/templateVersion", "http://purl.org/dc/terms/description": [ { "@value": "Declaring a single phenotype observation for an MVIKG sample, optionally tied to a specific sequence variant. Split out of the gene-variant-phenotype template so that many phenotype observations can reference the same variant and/or the same sample (one variant, many phenotypes)." } ], "http://purl.org/dc/terms/isVersionOf": [ { "@id": "https://w3id.org/np/RAR0BDV3XFKzSqviAGWtP_qnWTlYxMbCDQ0YYGbsbfdt4/template" } ], "@type": [ "https://w3id.org/np/o/ntemplate/AssertionTemplate", "https://w3id.org/np/o/ntemplate/UnlistedTemplate" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Declaring an MVIKG phenotype observation" } ], "https://w3id.org/kpxl/gen/terms/governedBy": [ { "@id": "https://w3id.org/spaces/mvikg" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern": [ { "@value": "phenotype: ${phenotypeName}" } ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st01" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st02" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st03" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st04" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st05" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st06" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st06b" }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/st07" } ], "https://w3id.org/np/o/ntemplate/hasTag": [ { "@value": "Biology" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType": [ { "@id": "https://w3id.org/biolink/vocab/PhenotypicFeature" }, { "@id": "https://w3id.org/spaces/mvikg/Record" } ] } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/Head", "@graph": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/pubinfo", "@graph": [ { "@id": "https://orcid.org/0000-0002-1267-0234", "http://xmlns.com/foaf/0.1/name": [ { "@value": "Tobias Kuhn" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-12T11:23:51+00:00", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/embeds": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/templateVersion" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/np/RAR0BDV3XFKzSqviAGWtP_qnWTlYxMbCDQ0YYGbsbfdt4/template" } ], "http://purl.org/nanopub/x/supersedes": [ { "@id": "https://w3id.org/np/RA_Xh_c0F-cmzx-VTZ1ApfLksZxjU8Amdxilo3dSwfgr8" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Declaring an MVIKG phenotype observation" } ], "http://www.w3.org/2004/02/skos/core#changeNote": [ { "@value": "Adds the optional comment statement the phenotype nanopublications carry but the template lacked: the prose phenotype description goes into the comment, and the label is now described as what the data puts there, a short name/identifier. Adds the MVIKG record class as a further target nanopublication type, the common type of all nanopublications created from the MVIKG templates." } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "https://w3id.org/np/RA-N4_kFxcruvBTlo1yJv29E4SLOXsx5KO_th69PprMrA" }, { "@id": "https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8" }, { "@id": "https://w3id.org/np/RAKc76yHLDbloE6ObluzYQsfX37v6qrZXbYeIKpe8-YUo" }, { "@id": "https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "https://w3id.org/np/RAgeON_vGgJCt5E4DPMi0eOPaGwNv9tbfFTRZtBwdQL0w/templateVersion" } ] }, { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "BuDUpYxR2RoK+kpezX0NLRbWfFsrgKUT4SyeyFLmsvrqDjchKGeJc9km/U1ZKxT5EvU/VkgZllrXguojE8B24vN72uxy3wQgU4euM4Il3Te3V6o8A3vns15G4OT2KXH2eExp2mfpmLGBmPPTdHvYag4CER/GQeSwpAtxpqy+hXQ=" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RALVLXhBNWuhsFknPAfGMPsrB0Rpi1QFwsWy8RnC5xHvc" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ] } ] } ]