Research Object Crate for Life Science cross-RI (Research Infrastructure) project
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Life Science cross-RI (Research Infrastructure) project
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description: The project allowed us to manage and build structured code scripts on the Jupyter Notebook, a simple web application which is user-friendly, flexible to use in the research community. The script is developed to address the specific needs of research between different platforms of dataset. These stakeholders have developed their own platforms for the annotation and standardisation of both data and metadata produced within their respective field. -The INFRAFRONTIER - European Mutant Mouse Archive (EMMA) comprises over 7200 mutant mouse lines that are extensively integrated and enriched with other public dataset. -The EU-OpenScreen offers compound screening protocols containing several metadata and will contribute to the development of tools for linking to the chemical entity database. -The IDR Image Data Resource is a public repository of reference image datasets from published scientific studies, where the community can submit, search and access high-quality bio-image data. -The CIM-XNAT is an XNAT deployment of the Molecular Imaging Center at UniTo that offers a suite of tools for uploading preclinical images. To address the challenges of integrating several EU-RI datasets with focus on preclinical and discovery research bioimaging, our aim is to develop cross researching queries through a web based interface to combine the resources of the RIs for integrating the information associated with data belonging to the involved RIs. Furthermore, the open-source tool provides users with free, open access to collections of datasets distributed over multiple sources that result from searches by specific keywords. The script allows the cross research in different fields of research as: Species, Strain, Gene, Cell line, Disease model, Chemical Compound. The novel aspects of this tool are mainly: a) user friendly, e.g. the user has the flexibility to research among the dataset easily with a simple API, intuitive for researchers and biomedical users. b) the possibility of making…
producer: EOSC-Life WP3 OC Team, cross RI project
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sd publisher: https://about.workflowhub.eu/
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Research Object Crate for Life Science cross-RI (Research Infrastructure) project
imported by: Małgorzata Wolniewicz
author: Elisabetta Spinazzola
content size: 1474960
creative work status: Stable
creator: Elisabetta Spinazzola
date created: 2023-06-27 07:39:45+00:00
date modified: 2023-06-27 09:25:04+00:00
date published: 2023-06-27 07:39:45+00:00
description: The project allowed us to manage and build structured code scripts on the Jupyter Notebook, a simple web application which is user-friendly, flexible to use in the research community. The script is developed to address the specific needs of research between different platforms of dataset. These stakeholders have developed their own platforms for the annotation and standardisation of both data and metadata produced within their respective field. -The INFRAFRONTIER - European Mutant Mouse Archive (EMMA) comprises over 7200 mutant mouse lines that are extensively integrated and enriched with other public dataset. -The EU-OpenScreen offers compound screening protocols containing several metadata and will contribute to the development of tools for linking to the chemical entity database. -The IDR Image Data Resource is a public repository of reference image datasets from published scientific studies, where the community can submit, search and access high-quality bio-image data. -The CIM-XNAT is an XNAT deployment of the Molecular Imaging Center at UniTo that offers a suite of tools for uploading preclinical images. To address the challenges of integrating several EU-RI datasets with focus on preclinical and discovery research bioimaging, our aim is to develop cross researching queries through a web based interface to combine the resources of the RIs for integrating the information associated with data belonging to the involved RIs. Furthermore, the open-source tool provides users with free, open access to collections of datasets distributed over multiple sources that result from searches by specific keywords. The script allows the cross research in different fields of research as: Species, Strain, Gene, Cell line, Disease model, Chemical Compound. The novel aspects of this tool are mainly: a) user friendly, e.g. the user has the flexibility to research among the dataset easily with a simple API, intuitive for researchers and biomedical users. b) the possibility of making…
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concept: Rhode Island
field of research: geology
field of research: earth sciences
field of research: oceanography
IPTC: Library and museum
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IPTC: Science and technology
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phrase: discovery research bioimaging
phrase: research object crate
phrase: reference image dataset
phrase: workflow project
phrase: query code
sentence: The project allowed us to manage and build structured code scripts on the Jupyter Notebook, a simple web application which is user-friendly, flexible to use in the research community.
sentence: A visual representation of the detailed results (dataset, metadata, information, query results) of the workflow can be printed immediately after the query run.
sentence: The script is developed to address the specific needs of research between different platforms of dataset.
cite-as: Elisabetta Spinazzola. "Research Object Crate for Life Science cross-RI (Research Infrastructure) project." ROHub. Jun 27 ,2023. https://w3id.org/ro-id/06cb618c-d858-4b50-88e3-7b737e4d193f.

Cross -research.ipynb
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