[ { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/assertion", "@graph": [ { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/get-kg-landscape-svg", "http://purl.org/dc/terms/description": [ { "@value": "Count-only landscape figure for mvikg/r/kg: the number of currently-approved samples, variants and phenotypes, and the number of approved cross-type associations among them (sample-variant via the shared gene, variant-phenotype via mvikg:isAssociatedWithVariant, sample-phenotype via sosa:isResultOf). Returns one row with a single ready-to-embed svg column; no geometric area-proportional layout, just three labelled circles with the counts written on them." } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "@type": [ "https://w3id.org/kpxl/grlc/grlc-query" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Get mvikg/r/kg landscape SVG" } ], "https://w3id.org/kpxl/grlc/endpoint": [ { "@id": "https://w3id.org/np/l/nanopub-query-1.1/repo/full" } ], "https://w3id.org/kpxl/grlc/sparql": [ { "@value": "prefix npa: \nprefix gen: \nprefix npx: \nprefix dct: \nprefix sosa: \nprefix biolink: \nprefix mvikg: \n\nselect ?svg where {\n\n {\n select (count(distinct ?sampleThing) as ?nSample) where {\n \n graph ?da_s { ?sampleThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_s), '/assertion$', '')) as ?dnp_s)\n graph ?vda_s { ?admin_s ?verdictPred_s ?dnp_s . filter(?verdictPred_s in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_s . }\n graph ?g_s { ?ri_s a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_s ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_s), '/assertion$', '')) as ?vnp_s)\n graph ?vpi_s { ?vnp_s dct:created ?vcreatedRaw_s . }\n bind(xsd:dateTime(?vcreatedRaw_s) as ?vcreated_s)\n filter not exists {\n graph ?vda2_s { ?admin2_s ?verdictPred2_s ?dnp_s . filter(?verdictPred2_s in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_s . }\n graph ?g2_s { ?ri2_s a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_s ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_s), '/assertion$', '')) as ?vnp2_s)\n graph ?vpi2_s { ?vnp2_s dct:created ?vcreated2Raw_s . }\n filter(xsd:dateTime(?vcreated2Raw_s) > ?vcreated_s)\n }\n filter(?verdictPred_s = npx:approvesOf)\n\n }\n }\n\n {\n select (count(distinct ?variantThing) as ?nVariant) where {\n \n graph ?da_v { ?variantThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_v), '/assertion$', '')) as ?dnp_v)\n graph ?vda_v { ?admin_v ?verdictPred_v ?dnp_v . filter(?verdictPred_v in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_v . }\n graph ?g_v { ?ri_v a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_v ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_v), '/assertion$', '')) as ?vnp_v)\n graph ?vpi_v { ?vnp_v dct:created ?vcreatedRaw_v . }\n bind(xsd:dateTime(?vcreatedRaw_v) as ?vcreated_v)\n filter not exists {\n graph ?vda2_v { ?admin2_v ?verdictPred2_v ?dnp_v . filter(?verdictPred2_v in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_v . }\n graph ?g2_v { ?ri2_v a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_v ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_v), '/assertion$', '')) as ?vnp2_v)\n graph ?vpi2_v { ?vnp2_v dct:created ?vcreated2Raw_v . }\n filter(xsd:dateTime(?vcreated2Raw_v) > ?vcreated_v)\n }\n filter(?verdictPred_v = npx:approvesOf)\n\n }\n }\n\n {\n select (count(distinct ?phenoThing) as ?nPheno) where {\n \n graph ?da_p { ?phenoThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_p), '/assertion$', '')) as ?dnp_p)\n graph ?vda_p { ?admin_p ?verdictPred_p ?dnp_p . filter(?verdictPred_p in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_p . }\n graph ?g_p { ?ri_p a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_p ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_p), '/assertion$', '')) as ?vnp_p)\n graph ?vpi_p { ?vnp_p dct:created ?vcreatedRaw_p . }\n bind(xsd:dateTime(?vcreatedRaw_p) as ?vcreated_p)\n filter not exists {\n graph ?vda2_p { ?admin2_p ?verdictPred2_p ?dnp_p . filter(?verdictPred2_p in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_p . }\n graph ?g2_p { ?ri2_p a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_p ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_p), '/assertion$', '')) as ?vnp2_p)\n graph ?vpi2_p { ?vnp2_p dct:created ?vcreated2Raw_p . }\n filter(xsd:dateTime(?vcreated2Raw_p) > ?vcreated_p)\n }\n filter(?verdictPred_p = npx:approvesOf)\n\n }\n }\n\n {\n select (count(distinct ?gene) as ?nSampleVariant) where {\n \n graph ?da_sv_s { ?sampleThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_sv_s), '/assertion$', '')) as ?dnp_sv_s)\n graph ?vda_sv_s { ?admin_sv_s ?verdictPred_sv_s ?dnp_sv_s . filter(?verdictPred_sv_s in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_sv_s . }\n graph ?g_sv_s { ?ri_sv_s a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_sv_s ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_sv_s), '/assertion$', '')) as ?vnp_sv_s)\n graph ?vpi_sv_s { ?vnp_sv_s dct:created ?vcreatedRaw_sv_s . }\n bind(xsd:dateTime(?vcreatedRaw_sv_s) as ?vcreated_sv_s)\n filter not exists {\n graph ?vda2_sv_s { ?admin2_sv_s ?verdictPred2_sv_s ?dnp_sv_s . filter(?verdictPred2_sv_s in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_sv_s . }\n graph ?g2_sv_s { ?ri2_sv_s a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_sv_s ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_sv_s), '/assertion$', '')) as ?vnp2_sv_s)\n graph ?vpi2_sv_s { ?vnp2_sv_s dct:created ?vcreated2Raw_sv_s . }\n filter(xsd:dateTime(?vcreated2Raw_sv_s) > ?vcreated_sv_s)\n }\n filter(?verdictPred_sv_s = npx:approvesOf)\n\n \n graph ?da_sv_v { ?variantThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_sv_v), '/assertion$', '')) as ?dnp_sv_v)\n graph ?vda_sv_v { ?admin_sv_v ?verdictPred_sv_v ?dnp_sv_v . filter(?verdictPred_sv_v in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_sv_v . }\n graph ?g_sv_v { ?ri_sv_v a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_sv_v ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_sv_v), '/assertion$', '')) as ?vnp_sv_v)\n graph ?vpi_sv_v { ?vnp_sv_v dct:created ?vcreatedRaw_sv_v . }\n bind(xsd:dateTime(?vcreatedRaw_sv_v) as ?vcreated_sv_v)\n filter not exists {\n graph ?vda2_sv_v { ?admin2_sv_v ?verdictPred2_sv_v ?dnp_sv_v . filter(?verdictPred2_sv_v in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_sv_v . }\n graph ?g2_sv_v { ?ri2_sv_v a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_sv_v ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_sv_v), '/assertion$', '')) as ?vnp2_sv_v)\n graph ?vpi2_sv_v { ?vnp2_sv_v dct:created ?vcreated2Raw_sv_v . }\n filter(xsd:dateTime(?vcreated2Raw_sv_v) > ?vcreated_sv_v)\n }\n filter(?verdictPred_sv_v = npx:approvesOf)\n\n graph ?gda { ?gene sosa:isFeatureOfInterestOf ?sampleThing ; biolink:has_sequence_variant ?variantThing . }\n }\n }\n\n {\n select (count(distinct ?phenoThing) as ?nVariantPheno) where {\n \n graph ?da_vp_v { ?variantThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_vp_v), '/assertion$', '')) as ?dnp_vp_v)\n graph ?vda_vp_v { ?admin_vp_v ?verdictPred_vp_v ?dnp_vp_v . filter(?verdictPred_vp_v in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_vp_v . }\n graph ?g_vp_v { ?ri_vp_v a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_vp_v ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_vp_v), '/assertion$', '')) as ?vnp_vp_v)\n graph ?vpi_vp_v { ?vnp_vp_v dct:created ?vcreatedRaw_vp_v . }\n bind(xsd:dateTime(?vcreatedRaw_vp_v) as ?vcreated_vp_v)\n filter not exists {\n graph ?vda2_vp_v { ?admin2_vp_v ?verdictPred2_vp_v ?dnp_vp_v . filter(?verdictPred2_vp_v in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_vp_v . }\n graph ?g2_vp_v { ?ri2_vp_v a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_vp_v ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_vp_v), '/assertion$', '')) as ?vnp2_vp_v)\n graph ?vpi2_vp_v { ?vnp2_vp_v dct:created ?vcreated2Raw_vp_v . }\n filter(xsd:dateTime(?vcreated2Raw_vp_v) > ?vcreated_vp_v)\n }\n filter(?verdictPred_vp_v = npx:approvesOf)\n\n \n graph ?da_vp_p { ?phenoThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_vp_p), '/assertion$', '')) as ?dnp_vp_p)\n graph ?vda_vp_p { ?admin_vp_p ?verdictPred_vp_p ?dnp_vp_p . filter(?verdictPred_vp_p in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_vp_p . }\n graph ?g_vp_p { ?ri_vp_p a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_vp_p ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_vp_p), '/assertion$', '')) as ?vnp_vp_p)\n graph ?vpi_vp_p { ?vnp_vp_p dct:created ?vcreatedRaw_vp_p . }\n bind(xsd:dateTime(?vcreatedRaw_vp_p) as ?vcreated_vp_p)\n filter not exists {\n graph ?vda2_vp_p { ?admin2_vp_p ?verdictPred2_vp_p ?dnp_vp_p . filter(?verdictPred2_vp_p in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_vp_p . }\n graph ?g2_vp_p { ?ri2_vp_p a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_vp_p ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_vp_p), '/assertion$', '')) as ?vnp2_vp_p)\n graph ?vpi2_vp_p { ?vnp2_vp_p dct:created ?vcreated2Raw_vp_p . }\n filter(xsd:dateTime(?vcreated2Raw_vp_p) > ?vcreated_vp_p)\n }\n filter(?verdictPred_vp_p = npx:approvesOf)\n\n graph ?vpda { ?phenoThing mvikg:isAssociatedWithVariant ?variantThing . }\n }\n }\n\n {\n select (count(distinct ?phenoThing) as ?nSamplePheno) where {\n \n graph ?da_sp_s { ?sampleThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_sp_s), '/assertion$', '')) as ?dnp_sp_s)\n graph ?vda_sp_s { ?admin_sp_s ?verdictPred_sp_s ?dnp_sp_s . filter(?verdictPred_sp_s in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_sp_s . }\n graph ?g_sp_s { ?ri_sp_s a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_sp_s ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_sp_s), '/assertion$', '')) as ?vnp_sp_s)\n graph ?vpi_sp_s { ?vnp_sp_s dct:created ?vcreatedRaw_sp_s . }\n bind(xsd:dateTime(?vcreatedRaw_sp_s) as ?vcreated_sp_s)\n filter not exists {\n graph ?vda2_sp_s { ?admin2_sp_s ?verdictPred2_sp_s ?dnp_sp_s . filter(?verdictPred2_sp_s in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_sp_s . }\n graph ?g2_sp_s { ?ri2_sp_s a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_sp_s ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_sp_s), '/assertion$', '')) as ?vnp2_sp_s)\n graph ?vpi2_sp_s { ?vnp2_sp_s dct:created ?vcreated2Raw_sp_s . }\n filter(xsd:dateTime(?vcreated2Raw_sp_s) > ?vcreated_sp_s)\n }\n filter(?verdictPred_sp_s = npx:approvesOf)\n\n \n graph ?da_sp_p { ?phenoThing a ; dct:isPartOf . }\n bind(iri(replace(str(?da_sp_p), '/assertion$', '')) as ?dnp_sp_p)\n graph ?vda_sp_p { ?admin_sp_p ?verdictPred_sp_p ?dnp_sp_p . filter(?verdictPred_sp_p in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g_sp_p . }\n graph ?g_sp_p { ?ri_sp_p a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin_sp_p ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda_sp_p), '/assertion$', '')) as ?vnp_sp_p)\n graph ?vpi_sp_p { ?vnp_sp_p dct:created ?vcreatedRaw_sp_p . }\n bind(xsd:dateTime(?vcreatedRaw_sp_p) as ?vcreated_sp_p)\n filter not exists {\n graph ?vda2_sp_p { ?admin2_sp_p ?verdictPred2_sp_p ?dnp_sp_p . filter(?verdictPred2_sp_p in (npx:approvesOf, npx:disapprovesOf)) }\n filter(exists {\n service {\n graph npa:graph { npa:hasCurrentSpaceState ?g2_sp_p . }\n graph ?g2_sp_p { ?ri2_sp_p a gen:RoleInstantiation ; npa:forSpace ; npa:forAgent ?admin2_sp_p ; npa:hasRoleType gen:AdminRole . }\n }\n })\n bind(iri(replace(str(?vda2_sp_p), '/assertion$', '')) as ?vnp2_sp_p)\n graph ?vpi2_sp_p { ?vnp2_sp_p dct:created ?vcreated2Raw_sp_p . }\n filter(xsd:dateTime(?vcreated2Raw_sp_p) > ?vcreated_sp_p)\n }\n filter(?verdictPred_sp_p = npx:approvesOf)\n\n graph ?spda { ?phenoThing sosa:isResultOf ?sampleThing . }\n }\n }\n\n bind(concat(\n '',\n '',\n '',\n '',\n 'Samples: ', str(?nSample), '',\n 'Variants: ', str(?nVariant), '',\n 'Phenotypes: ', str(?nPheno), '',\n 'Sample-Variant: ', str(?nSampleVariant), '',\n 'Variant-Phenotype: ', str(?nVariantPheno), '',\n 'Sample-Phenotype: ', str(?nSamplePheno), '',\n ''\n ) as ?svg)\n}" } ] } ] }, { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/provenance", "@graph": [ { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/Head", "@graph": [ { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAMJWiSJ0GvaRcSSOAlm5yAKl4bSHVZDFiAYX2BRpfk7s/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": 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