rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/sciencelive/np/" } } rows { name { value: "RAPZMgcYbScSAXnrnSySQwZzgSA_rn-xodlMxNlwwQYY8" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/sciencelive/np/RAPZMgcYbScSAXnrnSySQwZzgSA_rn-xodlMxNlwwQYY8/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { name { value: "soroye2020-iberian-bombus-substrate-robust-validated" } } rows { prefix { value: "http://schema.org/" } } rows { name { value: "endDate" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#date" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 9 } o_literal { lex: "2026-05-09" datatype: 1 } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/sciencelive/o/terms/" } } rows { name { value: "FORRT-Replication-Outcome" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "label" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "TEI-based extirpation mechanism replicates on Iberian Bombus (CEA + HEALPix nside=64; SSP3-7.0 projection)" } } } rows { name { value: "hasConclusionDescription" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "Soroye et al.\'s (2020) headline claim \342\200\224 that thermal-niche exceedance (TEI) increases extirpation probability for bumble bees \342\200\224 REPLICATES on Iberian Bombus.\n\nThe GLMM coefficient on standardised TEI_delta is positive, large, and credible at both spatial substrates tested in this replication: +0.479 at the original CEA grid (~100 km cells) and +0.454 at HEALPix nside=64 (~92 km cells, 95% HDI [+0.130, +0.751]). Both estimates are within \302\26130 percent of each other, same sign, same order of magnitude as Soroye 2020\'s continental-scale fit. A higher-resolution sibling study at HEALPix nside=128 (weatherxbiodiversity-projection-nside128) finds +0.347, HDI [+0.139, +0.533] \342\200\224 confirming substrate-robustness across three independent pixelisations.\n\nThe Tier-2 SSP3-7.0 projection (DestinE Climate DT, 2030\342\200\2232039 horizon) shows a systematic shift in mean future TEI from ~0.43 historically to ~0.45\342\200\2230.50, indicating that Iberian Bombus species are drifting toward their upper thermal niche edge. None of the studied species hit TEI > 1 (Soroye\'s actual extirpation threshold) at any currently-occupied cell over the next 15 years \342\200\224 the extirpation event Soroye projects is a longer-timescale phenomenon, with 2030\342\200\2232039 being the early-warning period rather than the extirpation period itself.\n\nWhen the per-species ranking is filtered to species with at least 10 occupied cells per substrate AND uses the GLMM main-effects-only \316\267 at projection time (per the substrate-sensitivity diagnostic in the sibling repo weatherxbiodiversity-substrate-sensitivity, \317\201_Spearman = +0.97 between substrates at this filter), the highest-risk Iberian species are B. humilis, B. muscorum, and B. ruderarius \342\200\224 short-tongued grassland specialists already documented in decline elsewhere in Europe. The lowest-risk species are B. terrestris, B. pascuorum, and B. pratorum \342\200\224 the dominant Western Palearctic generalists. The substrate-stable Iberian projection independently identifies the same European high-risk species the long-term monitoring data flag." } } } rows { name { value: "hasConfidenceLevel" } } rows { name { value: "HighConfidence" } } rows { quad { p_iri { } o_iri { } } } rows { name { value: "hasEvidenceDescription" } } rows { quad { p_iri { } o_literal { lex: "TIER 1 \342\200\224 historical fit (1901\342\200\2232014 CRU TS 3.24.01 from Soroye Figshare; GBIF Iberian Bombus occurrences via own download DOI).\n\nGLMM headline coefficient sc_TEI_delta (standardised TEI change between baseline 1901\342\200\2231974 and recent 2000\342\200\2232014):\n - CEA (~100 km cells): +0.479 (this run, replicates published v0.2.1)\n - HEALPix nside=64 (~92 km): +0.454 (95% HDI [+0.130, +0.751])\n - HEALPix nside=128 (~46 km): +0.347 (95% HDI [+0.139, +0.533]; sibling repo)\n All three within \302\26130 percent. Sign, magnitude, and HDI agree with Soroye 2020.\n\nCross-fit sanity check: variational-Bayes via statsmodels BinomialBayesMixedGLM agrees with full-posterior NUTS via bambi/PyMC on \316\262_sc_TEI_delta to within VB-underestimation noise (VB posterior SD ~1.4\303\227 smaller than NUTS posterior SD on the same data; report MCMC HDIs as authoritative). See results/headline_statistic_healpix.json.\n\nTIER 2 \342\200\224 SSP3-7.0 projection (DestinE Climate DT, IFS-NEMO standard, native HEALPix nside=128, 2020\342\200\2232029 + 2030\342\200\2232039 horizons).\n\nMean future TEI per species, 2030\342\200\2232039 horizon (substrate-invariant physical metric, Spearman \317\201 between substrates = +0.66 at n\342\211\2451, +0.90 at n\342\211\24510):\n - Most-shifted species: B. humilis (mean fut TEI ~0.50), B. muscorum (~0.49), B. ruderarius (~0.48)\n - Least-shifted: B. terrestris (~0.45), B. pascuorum (~0.45), B. pratorum (~0.45)\n\nPer-species community-mean \316\267 under SSP3-7.0 (filtered to species with n_cells\342\211\24510 at both substrates, main-effects-only \316\267 to avoid extrapolation amplification \342\200\224 \317\201_Spearman between substrates = +0.97 mid-term, +0.96 near-term):\n - Highest projected \316\267 (most at-risk): B. humilis (\316\267 = +1.58), B. muscorum (+1.50), B. ruderarius (+1.54)\n - Lowest projected \316\267 (most robust): B. terrestris (-2.26), B. pascuorum (-0.69), B. pratorum (-0.56)\n\nFraction of currently-occupied cells where future TEI exceeds 1.0 (Soroye\'s actual extirpation threshold) at 2030\342\200\2232039: 0.00 for every studied species \342\200\224 the extirpation threshold is not yet crossed under SSP3-7.0 over the next 15 years.\n\nFiles: results/headline_statistic.json (CEA), results/headline_statistic_healpix.json (HEALPix nside=64), results/projection_headline.json (Tier-2 per-species rank), results/posterior_bambi.nc + posterior_bambi_healpix.nc (full posteriors); figures figures/main_result_healpix.png + figures/projection_summary.png." } } } rows { name { value: "hasLimitationsDescription" } } rows { quad { p_iri { } o_literal { lex: "1. Substrate-coupling at projection time. Per-species ranking under SSP3-7.0 is grid-coupled at the projection step (NOT at fit time) for species observed in fewer than ~10 historical Iberian cells. This affects 18 of the 31 species in the study, including narrowly-distributed Pyrenean specialists (B. pyrenaeus, B. mucidus, B. mendax, B. wurflenii, B. monticola). The full mechanism (interaction-term amplification of substrate-specific predictor standardisation at extrapolation), validated and refuted hypotheses, and recommended reporting protocol are documented in the methodological sibling repo weatherxbiodiversity-substrate-sensitivity. The figures and rankings reported in this Outcome are filtered per that diagnostic (n_cells \342\211\245 10, main-effects-only \316\267).\n\n2. Reporting on \316\267, not p_extirp. The Tier-2 projection reports the GLMM linear predictor \316\267 (log-odds of extirpation) rather than its logistic transform p = expit(\316\267). Future TEI/PEI z-scores under SSP3-7.0 lie 2\342\200\2234\317\203 outside the Tier-1 training distribution; expit(\316\267) saturates uninformatively at ~1.0 in many cells where the actual signal is the GLMM\'s authentic relative ordering. Absolute extirpation probabilities derived from this projection are NOT interpretable as-is; relative ranking by \316\267 and substrate-invariant physical metrics (mean future TEI, fraction TEI_future>0.5) are the substrate-stable summaries.\n\n3. Negative-\316\267 species reflect random intercepts, not climate-driven benefit. The GLMM\'s species random effect dominates the projected \316\267 for B. terrestris (RE ~ -2.6) and B. pascuorum (RE ~ -1.0), encoding lower-than-average historical extirpation susceptibility from the 1901\342\200\2232014 GBIF training data. All climate-driven term contributions are POSITIVE for both species. The correct reading is \"historically robust species, with SSP3-7.0 adding moderate climate forcing on top\" \342\200\224 NOT \"projected to benefit from SSP3-7.0\".\n\n4. Sampling effort held at recent-period mean for the projection \342\200\224 assumes monitoring intensity in 2020\342\200\2232039 mirrors the 2000\342\200\2232014 baseline. Biases the projection if survey effort actually changes.\n\n5. DestinE Climate DT archive coverage. SSP3-7.0 IFS-NEMO archive populated through 2039 only at time of analysis; mid- and end-of-century horizons (2046\342\200\2232055, 2076\342\200\2232085) deferred to a follow-up Outcome when the archive extends past 2050.\n\n6. Daily Tmax/Tmin from 4-times-daily 2t snapshots. Notebook 06_destine_clean approximates daily extremes from the 00/06/12/18 UTC samples rather than from true daily max/min (which DestinE Climate DT does not archive \342\200\224 see notebooks/05_destine_download.py \302\247 Why no native max/min). Defensible at decadal mean; biased high on Tmax extremes by an unknown but small amount.\n\n7. tp 1-time-per-day approximation in the DestinE retrieve \342\200\224 flagged in 06_destine_clean as TP_HOURLY_TO_DAILY_FACTOR; defensible at decadal mean, invalid for any sub-monthly statistic.\n\n8. VB underestimation of posterior variance. statsmodels variational-Bayes posterior SD is ~1.4\303\227 smaller than the bambi/PyMC NUTS posterior SD on the same data; this Outcome\'s HDIs are NUTS-based.\n\n9. Geographic scope. Iberian peninsula only. Extension to other latitudes (especially boreal/alpine systems where Bombus diversity peaks) is not addressed by this replication." } } } rows { name { value: "hasOutcomeRepository" } } rows { prefix { value: "https://doi.org/10.5281/" } } rows { name { value: "zenodo.20113778" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "hasValidationStatus" } } rows { name { value: "Validated" } } rows { quad { p_iri { prefix_id: 10 } o_iri { } } } rows { name { value: "isOutcomeOf" } } rows { prefix { value: "https://w3id.org/sciencelive/np/RAybO8c8qx0p5bz9lMhMxzNsXhp0aXyd8GHnGC3i53vQY/" } } rows { name { value: "soroye2020-iberian-bombus-cea-and-healpix-nside64" } } rows { quad { p_iri { } o_iri { prefix_id: 13 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://orcid.org/" } } rows { name { value: "0000-0002-1784-2920" } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 27 } o_iri { prefix_id: 14 } g_iri { prefix_id: 2 name_id: 7 } } } rows { prefix { value: "http://xmlns.com/foaf/0.1/" } } rows { name { value: "name" } } rows { quad { s_iri { prefix_id: 14 name_id: 28 } p_iri { prefix_id: 15 } o_literal { lex: "Anne Fouilloux" } g_iri { prefix_id: 2 name_id: 9 } } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 7 name_id: 30 } o_literal { lex: "2026-05-11T18:35:15.682Z" datatype: 2 } } } rows { name { value: "creator" } } rows { quad { p_iri { } o_iri { prefix_id: 14 name_id: 28 } } } rows { name { value: "license" } } rows { prefix { value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 7 name_id: 32 } o_iri { prefix_id: 16 name_id: 2 } } } rows { name { value: "introduces" } } rows { quad { p_iri { prefix_id: 6 name_id: 33 } o_iri { prefix_id: 2 name_id: 12 } } } rows { name { value: "wasCreatedAt" } } rows { prefix { id: 8 value: "https://" } } rows { name { value: "platform.sciencelive4all.org" } } rows { quad { p_iri { prefix_id: 6 name_id: 34 } o_iri { prefix_id: 8 } } } rows { quad { p_iri { prefix_id: 11 name_id: 15 } o_literal { lex: "TEI-based extirpation mechanism replicates on Iberian Bombus (CEA + HEALPix nside=64; SSP3-7.0 projection)" } } } rows { prefix { id: 3 value: "https://w3id.org/np/o/ntemplate/" } } rows { name { value: "wasCreatedFromTemplate" } } rows { prefix { id: 9 value: "https://w3id.org/np/" } } rows { name { value: "RA2zljn0Nw9SadppOyxZoh-_Rxosslrq-vYG-p9SttnJE" } } rows { quad { p_iri { prefix_id: 3 name_id: 36 } o_iri { prefix_id: 9 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 6 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "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" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "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" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 1 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 6 name_id: 43 } o_iri { prefix_id: 14 name_id: 28 } } }