[ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/assertion", "@graph": [ { "@id": "https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU/variant", "http://example.org/mvikg/effect": [ { "@value": "38% co-localization with lysosomal marker TROva (partially reproducing the phoP mutant phenotype of 50%, vs 15% wild-type); deficient for growth in magnesium-depleted conditions in vitro; rescued by pBADmgtC" } ], "http://example.org/mvikg/evidenceText": [ { "@value": "Only the mgtC mutant strain exhibited a significantly higher mean percentage of co-localization: 38 % of bacteria per cell were positive for phagolysosomal fusion, compared with 50 % for the phoP mutant and 15 % for the wild-type strain" } ], "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://w3id.org/spaces/mvikg/r/kg" } ], "@type": [ "http://purl.obolibrary.org/obo/SO_0001059", "https://w3id.org/biolink/vocab/SequenceVariant" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "VAR_002" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "PMC3167890-S._Typhimurium_LT2_mgtC_mutant-variant1" } ] }, { "@id": "https://www.uniprot.org/uniprot/P0CI70", "@type": [ "https://w3id.org/biolink/vocab/Gene" ], "http://www.w3.org/ns/sosa/isFeatureOfInterestOf": [ { "@id": "https://w3id.org/np/RAlv6sSagnFdnhWhG7P5ocOwBkXBgTyOtuwnF2SlGalhc/sample" } ], "https://w3id.org/biolink/vocab/has_sequence_variant": [ { "@id": "https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU/variant" } ] } ] }, { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/provenance", "@graph": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/assertion", "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://w3id.org/mvikg/abox#VARIANT-VAR_002-P0CI70" } ] } ] }, { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/pubinfo", "@graph": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-10T10:29:01Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/hasNanopubType": [ { "@id": "http://purl.org/nanopub/x/ExampleNanopub" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU/variant" } ], "http://purl.org/nanopub/x/supersedes": [ { "@id": "https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU" } ], "http://www.w3.org/2004/02/skos/core#changeNote": [ { "@value": "Corrected the nt:wasCreatedFromProvenanceTemplate/PubinfoTemplate links, which previously pointed at the meta-templates used to define templates rather than the actual provenance/pubinfo templates used to create this nanopub. Also stabilized npx:introduces to this record's originally published resource IRI so repeated corrections resolve to one current version instead of appearing as unrelated records." } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "https://w3id.org/np/RAHKGU7g81YLKWl0S7g0oKdiRD5LhcPFMjVkAgLnipR_g" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "https://w3id.org/np/RA-N4_kFxcruvBTlo1yJv29E4SLOXsx5KO_th69PprMrA" }, { "@id": "https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8" }, { "@id": "https://w3id.org/np/RAKc76yHLDbloE6ObluzYQsfX37v6qrZXbYeIKpe8-YUo" }, { "@id": "https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "https://w3id.org/np/RAnlONjGChImRjDeXxTwrTmndhfv1guES7EnXlp1CaE3g/templateVersion" } ] }, { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "Bw/duqrOXSnMLrIHihw4xGRvq4nUV9UuUEyehn7XrnrgR9Miql/8SflEDeZc+5Ezq0VynK97OFF1i2XNuXCyu8orrOyfOq+CCMrWLSrhRRd+M71mCGpaHKou9znOAlzuGFFRrwG7Ew4vGJJHfDTpoyEnAaE1wX6yGMMNF/8ksKPgzhJ/QyVGjLzIdRElUAO2GIVEuyJCDdm0Fj1AtvirR6+hpDZHS31s0Fc0RsCtahyqFo+EH9yA9xp3+VF0yxgBqBrghW+6oEzC4pscKMET0KeLzQAbEcG883iwIeYelplk+Yj270zEkeP+j2ngKtDXt2i713Dgb7BSUmSMYSiQzQ==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/Head", "@graph": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RATiSDQQK1IrbMJp_bfdK9uC4rz1qqXDdpvvYjCzsPJjc/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] } ]