Nanopublication

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ID

https://w3id.org/np/RAV9R6K6Az0HuVFS1wcQBn3tvxyj3cLhDSQkjwHVuqlBA

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAV9R6K6Az0HuVFS1wcQBn3tvxyj3cLhDSQkjwHVuqlBA> .
@prefix sub: <https://w3id.org/np/RAV9R6K6Az0HuVFS1wcQBn3tvxyj3cLhDSQkjwHVuqlBA/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:get-org-to-ns-associations a <https://w3id.org/kpxl/grlc/grlc-query>;
    dct:description "This query returns all organism-to-nucleotide-sequence associations.";
    dct:license <http://www.apache.org/licenses/LICENSE-2.0>;
    rdfs:label "Get Organism to Nucleotide Sequence Associations";
    <https://w3id.org/kpxl/grlc/endpoint> <https://w3id.org/np/l/nanopub-query-1.1/repo/type/dc3636ccda207965f3ac58e3a54c80d1a9db39ba097848e5b41bf3fec7d66e44>;
    <https://w3id.org/kpxl/grlc/sparql> """prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix dct: <http://purl.org/dc/terms/>
prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>
prefix biodiv: <https://w3id.org/kpxl/biodiv/terms/>
prefix biolink: <https://w3id.org/biolink/vocab/>
prefix nt: <https://w3id.org/np/o/ntemplate/>

select ?taxonName ?taxonName_label ?relation ?nucleotideSequence ?creator ?date ?np where {
  graph npa:graph {
    ?np npx:hasNanopubType biodiv:OrganismToNucleotideSequenceAssociation .
    ?np npa:hasValidSignatureForPublicKeyHash ?pubkey .
    filter not exists { ?npx npx:invalidates ?np ; npa:hasValidSignatureForPublicKeyHash ?pubkey . }
    ?np dct:created ?date .
    ?np np:hasAssertion ?a .
    ?np np:hasPublicationInfo ?i .
    ?np npx:introduces ?association .
    optional { ?np npx:signedBy ?creator . }
  }
  graph ?a {
    ?association a biodiv:OrganismToNucleotideSequenceAssociation .
    ?association biolink:predicate ?relation .
    ?association biolink:subject ?organism .
    ?organism a ?taxonConcept .
    ?taxonConcept biodiv:hasTaxonName ?taxonName .
    ?association biolink:object ?nucleotideSequence .
  }
  graph ?i {
    optional { ?taxonName nt:hasLabelFromApi ?taxonName_label }
  }
}
order by desc(?date)""" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  orcid:0000-0002-1267-0234 foaf:name "Tobias Kuhn" .
  
  this: dct:created "2025-12-15T08:52:14.164Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:embeds sub:get-org-to-ns-associations;
    npx:supersedes <https://w3id.org/np/RA5ftKN-kmUkkclAhBSD8SFFXjC_NWiNy4NiP-O79Ncpc>;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>,
      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>, <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQD4Wj537OijfOWVtsHMznuXKISqBhtGDQZfdO6pbb4hg9EHMcUFGTLbWaPrP783PHv8HMAAPjvEkHLaOHMIknqhaIa5236lfBO3r+ljVdYBElBcLvROmwG+ZGtmPNZf7lMhI15xf5TfoaSa84AFRd5J2EXekK6PhaFQhRm1IpSYtwIDAQAB";
    npx:hasSignature "l7bnuiqIrYgr6Ti+aGES6xOJXWzyM46bt7X3PvIvrtOepovGDRhSBkvmy7H5TQWCtY0MmGCauVuNCI84GRoPLoRmZ1tHORJQj2wEK2HoJRP2WsMHDFe4BU7DoGwpdWdjNVp01hLFoF0W8pwU3aj/4ONLfANOjQQMrlb9o10sR3Q=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0002-1267-0234 .
}