[ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/pubinfo", "@graph": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs", "http://purl.org/dc/terms/created": [ { "@value": "2026-11-05T12:55:50Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/embeds": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/templateVersion" } ], "http://purl.org/nanopub/x/introduces": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/template" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Declaring an MVIKG sample context" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "https://w3id.org/np/RA-yPZEYODCS39dWOWm7NA_ClOGFHzPi8iYhLzoZf19GI" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "https://w3id.org/np/RA4o9JqSxNO2Z47itbAcxvpVfdR97t_7usxmdR90URXQs" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "https://w3id.org/np/RAgeON_vGgJCt5E4DPMi0eOPaGwNv9tbfFTRZtBwdQL0w" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "QryjolxnJcHDyQci8i0dubIGCOLhAyjoax5epPeEeEe8tj3avtVOEiUKVxOF9rybgB25uXa8JnGKsa6Jk66MPLNNMG9fZIuroSzLKsP3UuUBTo/kOF+Pui83zjeYwGS9H/bBhzu1cf0be6CIHBZCn+ivD4wtLORtZl2+3yJINOK2Kh0Djjzc2jipJ/qn1KuIUkyk694wCZjAKGFrBgiFD02K8adEjBNnb2F2yCD8AYznGH0xgn9fea3M1iY+vH4WKkSCKpygAPEmpHzrnEt6BO6UIkjidSm0L2xWZKt5+VSe3QUUFD/8qFWcCLgLalJd/1gx2me8Hyw16mY/wRxijg==" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/assertion", "@graph": [ { "@id": "http://example.org/mvikg/has_biome", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has biome" } ] }, { "@id": "http://purl.org/dc/dcmitype/Dataset", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "dataset" } ] }, { "@id": "http://purl.org/dc/terms/isPartOf", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is part of" } ] }, { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is a" } ] }, { "@id": "http://www.w3.org/ns/sosa/Sample", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "sample" } ] }, { "@id": "http://www.w3.org/ns/sosa/isSampleOf", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is sample of" } ] }, { "@id": "https://w3id.org/biolink/vocab/in_taxon", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "in taxon" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/biome", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the biome the taxon was sampled from (GOLD biome recommended)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/ols4/api/select?ontology=gold&fieldList=iri,label,description&q=" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/organism", "@type": [ "https://w3id.org/np/o/ntemplate/EmbeddedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the strain/organism this sample was taken from" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/project", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the PMC article/dataset this record is derived from (search by title, PMC ID or PMID)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/europepmc/webservices/rest/search?format=json&query=" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/sample", "@type": [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "this sample" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st01", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://www.w3.org/ns/sosa/Sample" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/sample" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st02", "@type": [ "https://w3id.org/np/o/ntemplate/GroupedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st03" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st04" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st03", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/project" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://purl.org/dc/terms/isPartOf" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/sample" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st04", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "http://purl.org/dc/dcmitype/Dataset" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/project" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/organism" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/ns/sosa/isSampleOf" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/sample" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st06", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/in_taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/organism" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/taxon", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder", "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the organism taxon the strain belongs to (NCBITaxon)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/ols/api/select?ontology=ncbitaxon&fieldList=iri,label,description&q=" } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st07", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/biome" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://example.org/mvikg/has_biome" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/taxon" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/templateVersion", "http://purl.org/dc/terms/description": [ { "@value": "Declaring an MVIKG sample context (PMC article/dataset, strain/organism, taxon, biome), independent of any one gene -- a sample can have many genes observed in it. To be referenced by gene-variant-phenotype observations." } ], "http://purl.org/dc/terms/isVersionOf": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/template" } ], "@type": [ "https://w3id.org/np/o/ntemplate/AssertionTemplate", "https://w3id.org/np/o/ntemplate/UnlistedTemplate" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Declaring an MVIKG sample context" } ], "https://w3id.org/kpxl/gen/terms/governedBy": [ { "@id": "https://w3id.org/spaces/mvikg" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern": [ { "@value": "this sample" } ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st01" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st02" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st03" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st04" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st05" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st06" }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/st07" } ], "https://w3id.org/np/o/ntemplate/hasTag": [ { "@value": "Biology" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType": [ { "@id": "http://www.w3.org/ns/sosa/Sample" } ] } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/provenance", "@graph": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0009-0005-5515-1230" } ] } ] }, { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/Head", "@graph": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAZBvSpT-wGLuGPQHvsTxue7NL-bSGMFB-74YtSvL_XUs/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] } ]