Nanopublication

ID

https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU
Formats

Content

@prefix this: <https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU> .
@prefix sub: <https://w3id.org/np/RAecQRxDvfV3pjTyPYYAmqRsXZK5-Qv3WrsSbD6EULwsU/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix mvikg: <http://example.org/mvikg/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sosa: <http://www.w3.org/ns/sosa/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:variant a <http://purl.obolibrary.org/obo/SO_0001059>, biolink:SequenceVariant;
    mvikg:effect "38% co-localization with lysosomal marker TROva (partially reproducing the phoP mutant phenotype of 50%, vs 15% wild-type); deficient for growth in magnesium-depleted conditions in vitro; rescued by pBADmgtC";
    mvikg:evidenceText "Only the mgtC mutant strain exhibited a significantly higher mean percentage of co-localization: 38 % of bacteria per cell were positive for phagolysosomal fusion, compared with 50 % for the phoP mutant and 15 % for the wild-type strain";
    dct:isPartOf <https://w3id.org/spaces/mvikg/r/kg>;
    rdfs:comment "VAR_002";
    rdfs:label "PMC3167890-S._Typhimurium_LT2_mgtC_mutant-variant1" .
  
  <https://www.uniprot.org/uniprot/P0CI70> a biolink:Gene;
    sosa:isFeatureOfInterestOf <https://w3id.org/np/RAlv6sSagnFdnhWhG7P5ocOwBkXBgTyOtuwnF2SlGalhc/sample>;
    biolink:has_sequence_variant sub:variant .
}

sub:provenance {
  sub:assertion prov:wasDerivedFrom <https://w3id.org/mvikg/abox#VARIANT-VAR_002-P0CI70> .
}

sub:pubinfo {
  this: dct:created "2026-11-09T20:51:13Z"^^xsd:dateTime;
    dct:creator orcid:0009-0005-5515-1230;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType npx:ExampleNanopub;
    npx:introduces sub:variant;
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA-yPZEYODCS39dWOWm7NA_ClOGFHzPi8iYhLzoZf19GI>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA4o9JqSxNO2Z47itbAcxvpVfdR97t_7usxmdR90URXQs>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAnlONjGChImRjDeXxTwrTmndhfv1guES7EnXlp1CaE3g/templateVersion> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB";
    npx:hasSignature "BarxgxirVtaVQr21kSxmR+4DNuKCpAAwbs/2Hsu3tiwtOgndP0EW7tTcDpJA/YVgF0gb7grHcBnF4S+J+/UqKZSJ9UGIRmCIu9rS3C5OGcAIYqTb8wYJAn5w7ib8wKWHLUWlPLb3XyIFywNGLhR91cjdS3LzAUj/kV8VYD4j/KY2G+7qxGKzfFABvQN+VQ9am6RGMd2oVLu4gBK+K0rDtJ5fWESmd3RvPODwEyZ5X1bPEHy/08G0t0sRULuns1dFmMWrabKIWhC3931QU+bX8mRe5Hwz/BTwnY8cbC6Es2CinNMtKrykVe8wybUl/eIjqdc8mFSIfDBBvzwc6z/DZg==";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0009-0005-5515-1230 .
}