https://w3id.org/np/RAfXc-rAMbvuY09MrDr5BHfD3l-y9Zul4ungWGVcCku2I
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAfXc-rAMbvuY09MrDr5BHfD3l-y9Zul4ungWGVcCku2I> .
@prefix sub: <https://w3id.org/np/RAfXc-rAMbvuY09MrDr5BHfD3l-y9Zul4ungWGVcCku2I/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
sub:get-kg-pending-phenotypes a <https://w3id.org/kpxl/grlc/grlc-query>;
dct:description "Lists mvikg/r/kg phenotype records whose approval status is 'pending' (latest admin npx:approvesOf/disapprovesOf verdict from a current mvikg admin decides the status; no verdict means pending). One row per record: its label, who created it and when.";
dct:license <https://creativecommons.org/licenses/by/4.0/>;
rdfs:label "Get mvikg/r/kg pending phenotypes";
<https://w3id.org/kpxl/grlc/endpoint> <https://w3id.org/np/l/nanopub-query-1.1/repo/full>;
<https://w3id.org/kpxl/grlc/sparql> """prefix npa: <http://purl.org/nanopub/admin/>
prefix gen: <https://w3id.org/kpxl/gen/terms/>
prefix npx: <http://purl.org/nanopub/x/>
prefix dct: <http://purl.org/dc/terms/>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix foaf: <http://xmlns.com/foaf/0.1/>
select distinct ?Name ?ModifiedBy ?ModifiedBy_label ?Modified_noheader ?approve_target ?reject_target ?np ?np_label where {
{
select distinct ?dnp ?label ?creator ?created where {
{
select ?stableThing ?dnp where {
graph npa:graph {
?dnp npx:introduces ?stableThing ; dct:created ?ddateRaw ; npa:hasValidSignatureForPublicKey ?pubkey .
filter not exists { ?inv npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKey ?pubkey . }
}
filter not exists {
graph npa:graph {
?dnp2 npx:introduces ?stableThing ; dct:created ?ddate2Raw ; npa:hasValidSignatureForPublicKey ?pubkey2 .
filter not exists { ?inv2 npx:invalidates ?dnp2 ; npa:hasValidSignatureForPublicKey ?pubkey2 . }
}
filter(?ddate2Raw > ?ddateRaw)
}
}
}
bind(iri(concat(str(?dnp), '/assertion')) as ?da)
graph ?da { ?stableThing a <https://w3id.org/biolink/vocab/PhenotypicFeature> ; dct:isPartOf <https://w3id.org/spaces/mvikg/r/kg> . }
bind(iri(concat(str(?dnp), '/pubinfo')) as ?pi)
graph ?pi { ?dnp dct:creator ?creator ; dct:created ?createdRaw . }
bind(replace(str(?createdRaw), '[.]000Z$', 'Z') as ?created)
optional { graph ?da { ?stableThing rdfs:label ?lblEntity } }
optional { graph ?pi { ?dnp rdfs:label ?lblPub } }
bind(coalesce(?lblEntity, ?lblPub, str(?stableThing)) as ?label)
}
}
optional {
graph ?vda { ?admin ?verdictPred ?dnp . filter(?verdictPred in (npx:approvesOf, npx:disapprovesOf)) }
filter(exists {
service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> {
graph npa:graph { <http://purl.org/nanopub/admin/thisRepo> npa:hasCurrentSpaceState ?g . }
graph ?g { ?ri a gen:RoleInstantiation ; npa:forSpace <https://w3id.org/spaces/mvikg> ; npa:forAgent ?admin ; npa:hasRoleType gen:AdminRole . }
}
})
bind(iri(replace(str(?vda), '/assertion$', '')) as ?vnp)
graph ?vpi { ?vnp dct:created ?vcreatedRaw . }
bind(xsd:dateTime(?vcreatedRaw) as ?vcreated)
filter not exists {
graph ?vda2 { ?admin2 ?verdictPred2 ?dnp . filter(?verdictPred2 in (npx:approvesOf, npx:disapprovesOf)) }
filter(exists {
service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> {
graph npa:graph { <http://purl.org/nanopub/admin/thisRepo> npa:hasCurrentSpaceState ?g2 . }
graph ?g2 { ?ri2 a gen:RoleInstantiation ; npa:forSpace <https://w3id.org/spaces/mvikg> ; npa:forAgent ?admin2 ; npa:hasRoleType gen:AdminRole . }
}
})
bind(iri(replace(str(?vda2), '/assertion$', '')) as ?vnp2)
graph ?vpi2 { ?vnp2 dct:created ?vcreated2Raw . }
filter(xsd:dateTime(?vcreated2Raw) > ?vcreated)
}
optional { graph ?vda { ?vda rdfs:comment ?reason } }
}
bind(if(bound(?verdictPred), if(?verdictPred = npx:approvesOf, 'approved', 'rejected'), 'pending') as ?finalStatus)
filter(?finalStatus = 'pending')
bind(str(?dnp) as ?np) bind('^' as ?np_label)
bind(?label as ?Name)
optional { ?creator foaf:name ?cname }
bind(?creator as ?ModifiedBy)
bind(coalesce(?cname, replace(str(?creator), '^.*/', '')) as ?ModifiedBy_label)
bind(?created as ?Modified_noheader)
bind(npx:approvesOf as ?approve_target)
bind(npx:disapprovesOf as ?reject_target)
}""" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0009-0005-5515-1230 .
}
sub:pubinfo {
this: dct:created "2026-11-09T18:10:32Z"^^xsd:dateTime;
dct:creator orcid:0009-0005-5515-1230;
dct:license <https://creativecommons.org/licenses/by/4.0/>;
npx:embeds sub:get-kg-pending-phenotypes;
npx:supersedes <https://w3id.org/np/RASVMNF3n8Nfdvhl5k2bCb5vMTnsog0Fzf6BD9TRsz4OY>,
<https://w3id.org/np/RAWRiPLt84YkXP3l4MZe1P9sKYswFY_8bXFRCke1kITck>, <https://w3id.org/np/RAqTBqyZje23Q00EZhkDOd4GyncgH3nxXSS82vz6WaM2E>;
rdfs:label "Get mvikg/r/kg pending phenotypes";
skos:changeNote "ModifiedBy now carries the creator's ORCID IRI (with ModifiedBy_label as the display-name companion), so it renders as a link back to the creator instead of plain text.",
"Replaced the supersedes-chain exclusion filter with the project's standard resolution pattern (npa:graph + npx:introduces + npa:hasValidSignatureForPublicKey, excluding npx:invalidates), matching how the real builder picks a resource's current defining nanopub. This requires the content nanopub to re-introduce the SAME stable entity IRI on every version (now fixed for the two phenotype records that had drifted to a fresh IRI per publish). Label now checks both the entity's own label and the nanopub-level label, preferring whichever is present (samples only have the latter, phenotypes only the former).";
nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
<https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB";
npx:hasSignature "V9QDy9d+TDQlV6Mp8qoeGP33d9iBXN3/CmAb+9FBqeYKDQSBTOkCwLBZ+uuMfHKOwLqzjtE8F/HOni/rN912oryH0DOyoFNuxNldvESL4g9/nv90habfyi/+WaXQpT2iP5FNy2iCTylpI4i7Zuv8D8pTKG8epPBYPPu9+hNnnfcPcSkZhWXbJ6UIvpWLWWiDsWnSUuDn52H0bOR8LZ9FpqvWXRAeX5PP2w+VwjveTOCgSV+M4PuPIb6eGL5f4OJ3dJaOzJ6p3/a5CkLcyj43TRpnEUEZf34+8FWV92EgKbyXN4STc6SogLFxnEB1Uf+MJlzYBQ0/O0+L8T65VqV/8w==";
npx:hasSignatureTarget this:;
npx:signedBy orcid:0009-0005-5515-1230 .
}