rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RAg11HQ_ijrRE1ufnrWBPISgSH4scD7WBb_gVOYhLwh6M" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RAg11HQ_ijrRE1ufnrWBPISgSH4scD7WBb_gVOYhLwh6M/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "https://w3id.org/kpxl/grlc/" } } rows { namespace { name: "grlc" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dct" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "https://w3id.org/np/o/ntemplate/" } } rows { namespace { name: "nt" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { namespace { name: "rdfs" value { prefix_id: 9 name_id: 2 } } } rows { prefix { value: "https://orcid.org/" } } rows { namespace { name: "orcid" value { prefix_id: 10 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 11 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 12 } o_iri { prefix_id: 3 } } } rows { name { value: "get-mvikg-variant-phenotypes" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 5 } o_literal { lex: "Lists the phenotype and antibiogram observation records associated with a sequence variant (\'partid\') of the MVIKG knowledge graph, with description, baseline, sample and review status. Only records signed by a current admin, maintainer or member of the mvikg space count, in their newest non-invalidated version; the review status is the latest npx:approvesOf / npx:disapprovesOf verdict of a current mvikg admin on that version (none: pending)." } g_iri { prefix_id: 2 name_id: 4 } } } rows { name { value: "license" } } rows { prefix { value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 5 name_id: 14 } o_iri { prefix_id: 13 name_id: 2 } } } rows { name { value: "grlc-query" } } rows { quad { p_iri { prefix_id: 12 name_id: 10 } o_iri { prefix_id: 4 name_id: 15 } } } rows { name { value: "label" } } rows { quad { p_iri { prefix_id: 9 } o_literal { lex: "Get MVIKG phenotypes of a variant" } } } rows { name { value: "endpoint" } } rows { prefix { value: "https://w3id.org/np/l/nanopub-query-1.1/repo/" } } rows { name { value: "full" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 14 } } } rows { name { value: "sparql" } } rows { quad { p_iri { prefix_id: 4 } o_literal { lex: "prefix rdf: \nprefix rdfs: \nprefix dct: \nprefix np: \nprefix npa: \nprefix npx: \nprefix gen: \nprefix sosa: \nprefix biolink: \nprefix mvikg: \nprefix obo: \n\nselect ?phenotype ?phenotype_label ?description ?compared_to ?sample ?sample_label ?status ?np ?np_label where {\n {\n select ?phenotype ?np (sample(?l) as ?pl) (sample(?c) as ?description) (sample(?ct) as ?compared_to) (sample(coalesce(?samc, ?sam)) as ?sample) (min(?saml) as ?sl) (max(?verdict) as ?mv) where {\n service {\n select (group_concat(distinct ?pk; separator=\' \') as ?memberKeys) (group_concat(distinct ?apk; separator=\' \') as ?adminKeys) where {\n graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?sg . }\n graph ?sg {\n ?ri a gen:RoleInstantiation ; npa:forSpace ; npa:hasRoleType ?tier ; npa:forAgent ?agent .\n filter(?tier in (gen:AdminRole, gen:MaintainerRole, gen:MemberRole))\n ?acct a npa:AccountState ; npa:agent ?agent ; npa:pubkey ?pk .\n bind(if(?tier = gen:AdminRole, ?pk, \'\') as ?apk)\n }\n }\n }\n {\n select distinct ?alias where {\n { bind(?_partid_iri as ?alias) }\n union\n { graph npa:graph { ?cur npx:introduces ?_partid_iri . ?cur npx:supersedes* ?old . ?old npx:introduces ?alias . } }\n }\n }\n graph ?a { ?phenotype mvikg:isAssociatedWithVariant ?alias . ?phenotype a biolink:PhenotypicFeature ; dct:isPartOf . }\n graph npa:graph {\n ?np np:hasAssertion ?a ; npx:introduces ?phenotype ; dct:created ?date ;\n npa:hasValidSignatureForPublicKeyHash ?pubkey .\n filter not exists { ?inv npx:invalidates ?np ; npa:hasValidSignatureForPublicKeyHash ?pubkey . }\n }\n filter(contains(?memberKeys, ?pubkey))\n optional {\n graph npa:graph {\n ?np2 npx:introduces ?phenotype ; dct:created ?date2 ; npa:hasValidSignatureForPublicKeyHash ?pubkey2 .\n filter not exists { ?inv2 npx:invalidates ?np2 ; npa:hasValidSignatureForPublicKeyHash ?pubkey2 . }\n }\n filter(contains(?memberKeys, ?pubkey2) && concat(str(?date2), \'>\', str(?np2)) > concat(str(?date), \'>\', str(?np)))\n }\n filter(!bound(?np2))\n optional { graph ?a { ?phenotype rdfs:label ?l } }\n optional { graph ?a { ?phenotype rdfs:comment ?c } }\n optional { graph ?a { ?phenotype mvikg:comparedTo ?ct } }\n optional { graph ?a { ?phenotype sosa:isResultOf ?sam } }\n optional {\n graph npa:graph {\n ?samonp npx:introduces ?sam . ?samnp npx:supersedes* ?samonp ; npx:introduces ?samc ; rdfs:label ?saml ;\n npa:hasValidSignatureForPublicKeyHash ?sampk .\n filter not exists { ?saminv npx:invalidates ?samnp ; npa:hasValidSignatureForPublicKeyHash ?sampk . }\n }\n }\n optional {\n values ?vpred { npx:approvesOf npx:disapprovesOf }\n graph ?va { ?vagent ?vpred ?np . }\n graph npa:graph {\n ?vnp np:hasAssertion ?va ; dct:created ?vdate ; npa:hasValidSignatureForPublicKeyHash ?vpk .\n filter not exists { ?vinv npx:invalidates ?vnp ; npa:hasValidSignatureForPublicKeyHash ?vpk . }\n }\n filter(contains(?adminKeys, ?vpk))\n bind(concat(str(?vdate), \'>\', if(?vpred = npx:disapprovesOf, \'d\', \'a\')) as ?verdict)\n }\n } group by ?phenotype ?np\n }\n bind(coalesce(str(?pl), replace(str(?phenotype), \'^.*/np/\', \'\')) as ?phenotype_label)\n bind(coalesce(str(?sl), replace(str(?sample), \'^.*/np/\', \'\')) as ?sample_label)\n bind(if(!bound(?mv), \'\342\217\263 pending\', if(strends(?mv, \'d\'), \'\360\237\232\253 rejected\', \'\342\234\205 approved\')) as ?status)\n bind(\'^\' as ?np_label)\n}\norder by ?phenotype_label" } } } rows { name { value: "wasAttributedTo" } } rows { name { value: "0000-0002-1267-0234" } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 11 name_id: 20 } o_iri { prefix_id: 10 } g_iri { prefix_id: 2 name_id: 7 } } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 5 name_id: 22 } o_literal { lex: "2026-11-12T12:26:36.915+01:00" datatype: 1 } g_iri { prefix_id: 2 name_id: 9 } } } rows { name { value: "creator" } } rows { quad { p_iri { prefix_id: 5 name_id: 23 } o_iri { prefix_id: 10 name_id: 21 } } } rows { quad { p_iri { prefix_id: 5 name_id: 14 } o_iri { prefix_id: 13 name_id: 2 } } } rows { name { value: "embeds" } } rows { quad { p_iri { prefix_id: 7 name_id: 24 } o_iri { prefix_id: 2 name_id: 12 } } } rows { quad { p_iri { prefix_id: 9 name_id: 16 } o_literal { lex: "Get MVIKG phenotypes of a variant" } } } rows { name { value: "wasCreatedFromProvenanceTemplate" } } rows { name { value: "RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU" } } rows { quad { p_iri { prefix_id: 6 name_id: 25 } o_iri { prefix_id: 1 } } } rows { name { value: "wasCreatedFromPubinfoTemplate" } } rows { name { value: "RA-N4_kFxcruvBTlo1yJv29E4SLOXsx5KO_th69PprMrA" } } rows { quad { p_iri { prefix_id: 6 } o_iri { prefix_id: 1 } } } rows { name { value: "RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8" } } rows { quad { o_iri { } } } rows { name { value: "wasCreatedFromTemplate" } } rows { name { value: "RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k" } } rows { quad { p_iri { prefix_id: 6 } o_iri { prefix_id: 1 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 7 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "e4dEqZgq4em6l1ELmPiEyiJPrZ75EEPOyi5gs9NxNZgch8uG6KsA+GD2EP/Adc0Scz5vpJ6BeurMxNZPZa5Y2tZXMwChyYQZm8jN2FK5OIybvklwkZLB52mHFP/oaPNLi/+SfSGeXfanODVte+6LF2P50oVWnpZ2lCj7yNfH3EE=" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 1 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 7 name_id: 37 } o_iri { prefix_id: 10 name_id: 21 } } }