https://w3id.org/np/RAgOjB_tJuPbhbusgNbNyU23LGFIz_rNXgXk3Nu0HH3QY
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAgOjB_tJuPbhbusgNbNyU23LGFIz_rNXgXk3Nu0HH3QY> .
@prefix sub: <https://w3id.org/np/RAgOjB_tJuPbhbusgNbNyU23LGFIz_rNXgXk3Nu0HH3QY/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<http://qudt.org/schema/qudt/hasQuantity> rdfs:label "has quantity" .
<http://softeng.polito.it/rsctx#hasTemperature> rdfs:label "has temperature in °C" .
rdf:type rdfs:label "is an instance of" .
<https://nanodash.knowledgepixels.com/part?id=https://w3id.org/spaces/biodiversity/r/ontology/sample&context=https://w3id.org/spaces/biodiversity/r/ontology&label=Sample>
rdfs:label "Sample" .
<https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation" .
<https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
<https://w3id.org/biolink/vocab/timepoint> rdfs:label "has the timepoint" .
<https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates> rdfs:label "has the decimal degree location coordinates" .
sub:assertion a nt:AssertionTemplate, nt:UnlistedTemplate;
dct:description "Declares the collection of small representative quantities of biological material or environmental material containing biological material for a specific purpose.";
rdfs:label "Declaring the collection of a sample";
nt:hasNanopubLabelPattern "Sampling of ${environmentMaterial}${tissueMaterial} from ${ecosystem}";
nt:hasStatement sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06, sub:st07,
sub:st21, sub:st22, sub:st23, sub:st24, sub:st30, sub:st31, sub:st32;
nt:hasTag "naturalProducts" .
sub:association a nt:IntroducedResource, nt:LocalResource .
sub:coordinates a nt:LiteralPlaceholder;
rdfs:label "lat/long(optional altitude), e.g. +47.37+8.54+400.5";
nt:hasRegex "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" .
sub:ecosystem a nt:GuidedChoicePlaceholder;
rdfs:label "specify the type of ecosystem of sampling location (ENVO ontology)";
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&q=" .
sub:environmentMaterial a nt:GuidedChoicePlaceholder;
rdfs:label "specify the type of environmental sample (ENVO ontology)";
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&q=" .
sub:location a nt:LocalResource;
rdfs:label "sampling location" .
sub:permit a nt:ValuePlaceholder;
rdfs:label "specify the permit ID or URL" .
sub:purpose a nt:GuidedChoicePlaceholder;
rdfs:label "specify the purpose of sampling (MESH ontology)";
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=mesh&q=" .
sub:quantity a nt:LiteralPlaceholder;
rdfs:label "specify the quantity of sample in grams";
nt:hasDatatype xsd:positiveInteger .
sub:sampling a nt:LocalResource;
rdfs:label "sampling activity" .
sub:st01 rdf:object <https://nanodash.knowledgepixels.com/part?id=https://w3id.org/spaces/biodiversity/r/ontology/sample&context=https://w3id.org/spaces/biodiversity/r/ontology&label=Sample>;
rdf:predicate rdf:type;
rdf:subject sub:association .
sub:st02 rdf:object sub:sampling;
rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
rdf:subject sub:association .
sub:st03 rdf:object sub:targetMaterial;
rdf:predicate <https://w3id.org/biolink/vocab/subject>;
rdf:subject sub:association .
sub:st04 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:environmentMaterial;
rdf:predicate rdf:type;
rdf:subject sub:targetMaterial .
sub:st05 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:tissueMaterial;
rdf:predicate rdf:type;
rdf:subject sub:targetMaterial .
sub:st06 rdf:object sub:quantity;
rdf:predicate <http://qudt.org/schema/qudt/hasQuantity>;
rdf:subject sub:targetMaterial .
sub:st07 a nt:OptionalStatement;
rdf:object sub:taxonname;
rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName>;
rdf:subject sub:targetMaterial .
sub:st21 rdf:object sub:location;
rdf:predicate <https://w3id.org/biolink/vocab/subject>;
rdf:subject sub:association .
sub:st22 rdf:object sub:coordinates;
rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates>;
rdf:subject sub:location .
sub:st23 rdf:object sub:ecosystem;
rdf:predicate rdf:type;
rdf:subject sub:location .
sub:st24 a nt:OptionalStatement;
rdf:object sub:temperature;
rdf:predicate <http://softeng.polito.it/rsctx#hasTemperature>;
rdf:subject sub:location .
sub:st30 rdf:object sub:timepoint;
rdf:predicate <https://w3id.org/biolink/vocab/timepoint>;
rdf:subject sub:association .
sub:st31 a nt:OptionalStatement;
rdf:object sub:permit;
rdf:predicate <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPermit>;
rdf:subject sub:association .
sub:st32 rdf:object sub:purpose;
rdf:predicate <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPurpose>;
rdf:subject sub:association .
sub:targetMaterial a nt:LocalResource;
rdfs:label "sample material" .
sub:taxonname a nt:GuidedChoicePlaceholder;
rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)";
nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
sub:temperature a nt:LiteralPlaceholder;
rdfs:label "specify the temperature of the sampling location in °C";
nt:hasDatatype xsd:decimal .
sub:timepoint a nt:LiteralPlaceholder;
rdfs:label "XSD DateTime format (2023-03-30T22:17:11Z)";
nt:hasRegex "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" .
sub:tissueMaterial a nt:GuidedChoicePlaceholder;
rdfs:label "specify the type of tissue sample (BTO ontology)";
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=bto&q=" .
<https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPermit> rdfs:label "has a sampling permit" .
<https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPurpose> rdfs:label "has sampling purpose" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0001-6534-6609 .
}
sub:pubinfo {
orcid:0000-0001-6534-6609 foaf:name "Mitja M. Zdouc" .
this: dct:created "2026-09-23T06:45:45.981Z"^^xsd:dateTime;
dct:creator orcid:0000-0001-6534-6609;
dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
npx:embeds sub:assertion;
npx:supersedes <https://w3id.org/np/RAGCuZ_3Olb7gTIqVZ8omd0a9QNpBaDokcDe_L8my6Azc>;
npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
rdfs:label "Declaring the collection of a sample";
skos:changeNote "Fixed the nanopub lable pattern";
nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
<https://w3id.org/np/RAKc76yHLDbloE6ObluzYQsfX37v6qrZXbYeIKpe8-YUo>, <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>,
<https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
nt:wasCreatedFromTemplate <https://w3id.org/np/RA9cOdAwjxTF6qNNFkXTl_EgOan0LDPmu0fWnIgmZu-7E/template> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAnj9AmTE2Q7RxppglmQDLGezpd8yHXSVP7AqgUhyZ36SjaTCdhOlYhCIapxtat5RBYFjIQ5OreKs7GRf29kXtKqAsBR4skDZ10RviKdb52YvZEC+r1CsqOOuMCpG8fQhIWiD53PonxeeyjL9RXWFh1n4lGQ+Bo8qhIQQKgjEHnpwOgb+rLSg1V/K0j6DDW21ScOC1w1FGn+rgf2U3f0jnr9/EL8wV6uhUsRmVyPQF5YqoYsu1e10cxoXO3A63BZFg6GYeUWBenxlSo/8ZIM0Q/mk3Rt6W46aj9srX9o6KyQotN1Hux6QkgtG6usCaQEHr0g37Ip6NMPScT/rTfu3fZwIDAQAB";
npx:hasSignature "aKztYtWGoVX7GzW2rMF+WFcpKrsKQ9Q+SP6i2nDPtiauVTOuFcdeaj6qc+u57GbPQDY5a0lZCPdHZOlXIQVWP9TraU39AIc+z41mRXW5dTfvhKor/qM1DTFb+2rvP1z36Xs+IfNftWUdB71uDfg53w19i0k7EeZZkBjMOoY4mHP6q+SDGLQx3ImMc8Zu9APVdgTPcF8h8tef4XlQBGDfQHyE3br31y1UMV0hXV6y+FozRsRQ6GGbtNGUDBbeH+872KhftvYzsbPfJJNAE9ceDxieDNwxSWnFHavSkeutVY6q/R0Ik4xZkTDODTvLk93sGKWmPoOFA9ERdHNp23oGUw==";
npx:hasSignatureTarget this:;
npx:signedBy orcid:0000-0001-6534-6609 .
}