@prefix this: <https://w3id.org/np/RAkm0SJxATYEtHVEKtfM3M-hZQ8cw9LQQnOc3hy0NlJD8> .
@prefix sub: <https://w3id.org/np/RAkm0SJxATYEtHVEKtfM3M-hZQ8cw9LQQnOc3hy0NlJD8/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix orcid: <https://orcid.org/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix gen: <https://w3id.org/kpxl/gen/terms/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <http://purl.jp/bio/10/mpo#MPO_10004> rdfs:label "is confirmed to grow at pH" .
  
  <http://purl.jp/bio/10/mpo#MPO_10008> rdfs:label "is confirmed to grow at temperature (°C)" .
  
  <http://purl.jp/bio/10/mpo#MPO_10020> rdfs:label "has minimum optimal growth temperature (°C)" .
  
  <http://purl.jp/bio/10/mpo#MPO_10021> rdfs:label "has maximum optimal growth temperature (°C)" .
  
  <http://purl.jp/bio/10/mpo#MPO_10026> rdfs:label "has morphology" .
  
  <http://purl.obolibrary.org/obo/MICRO_0000069> rdfs:label "liquid" .
  
  <http://purl.obolibrary.org/obo/MICRO_0000070> rdfs:label "solid" .
  
  <http://purl.obolibrary.org/obo/MICRO_0000472> rdfs:label "is culture medium used by" .
  
  <http://purl.obolibrary.org/obo/OMP_0000188> rdfs:label "gram-positive" .
  
  <http://purl.obolibrary.org/obo/OMP_0000189> rdfs:label "gram-negative" .
  
  <http://purl.obolibrary.org/obo/OMP_0007143> rdfs:label "sporulating" .
  
  <http://purl.obolibrary.org/obo/OMP_0007236> rdfs:label "non-sporulating" .
  
  <http://purl.obolibrary.org/obo/OMP_0007811> rdfs:label "pigmentation phenotype" .
  
  <http://purl.obolibrary.org/obo/RO_0000087> rdfs:label "has ecological role" .
  
  <http://purl.obolibrary.org/obo/RO_0002200> rdfs:label "has phenotype" .
  
  <http://purl.obolibrary.org/obo/RO_0002215> rdfs:label "has enzymatic activity" .
  
  <http://purl.obolibrary.org/obo/RO_0002556> rdfs:label "is pathogen of" .
  
  dct:description rdfs:label "has description" .
  
  dct:identifier rdfs:label "has 16S rRNA accession (GenBank)" .
  
  <http://purl.org/spar/cito/isDescribedBy> rdfs:label "is described in publication (DOI)" .
  
  <http://rs.tdwg.org/dwc/iri/identifiedBy> rdfs:label "is identified by" .
  
  <http://rs.tdwg.org/dwc/iri/inCollection> rdfs:label "is available in collection" .
  
  rdf:type rdfs:label "is an instance of" .
  
  rdfs:label rdfs:label "has label" .
  
  prov:wasAttributedTo rdfs:label "is isolated by" .
  
  prov:wasDerivedFrom rdfs:label "is derived from sample" .
  
  <http://www.wikidata.org/prop/direct/P4333> rdfs:label "has genome assembly accession" .
  
  <https://schema.org/contactPoint> rdfs:label "has contact person" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonName> rdfs:label "belongs to taxon" .
  
  <https://w3id.org/mixs/0000015> rdfs:label "has oxygen requirement" .
  
  <https://w3id.org/mixs/0000016> rdfs:label "has processing history" .
  
  <https://w3id.org/mixs/0000110> rdfs:label "has storage temperature (°C)" .
  
  <https://w3id.org/mixs/RelToOxygenEnum#aerobe> rdfs:label "aerobe" .
  
  <https://w3id.org/mixs/RelToOxygenEnum#anaerobe> rdfs:label "anaerobe" .
  
  <https://w3id.org/mixs/RelToOxygenEnum#microaerophilic> rdfs:label "microaerophilic" .
  
  sub:accessionID a nt:LiteralPlaceholder;
    rdfs:label "enter GenBank accession of 16S rRNA sequence (e.g. ‘MN123456’)" .
  
  sub:collection a nt:ExternalUriPlaceholder;
    rdfs:label "enter URL/Information of culture collection entry" .
  
  sub:contactPerson a nt:ValuePlaceholder;
    rdfs:label "ORCID URL or full name of contact person" .
  
  sub:ecologicalRole a nt:GuidedChoicePlaceholder;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=chebi&q=" .
  
  sub:enzymeActivity a nt:GuidedChoicePlaceholder;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=go&q=" .
  
  sub:genomeAccession a nt:LiteralPlaceholder;
    rdfs:label "enter genome assembly accession (e.g. ‘GCA_012345678.1’)" .
  
  sub:gramStain a nt:RestrictedChoicePlaceholder;
    nt:possibleValue <http://purl.obolibrary.org/obo/OMP_0000188>, <http://purl.obolibrary.org/obo/OMP_0000189> .
  
  sub:group10 a nt:GroupedStatement;
    nt:hasStatement sub:st10, sub:st11, sub:st12;
    nt:statementOrder "10" .
  
  sub:group11 a nt:GroupedStatement, nt:OptionalStatement;
    nt:hasStatement sub:st32, sub:st33, sub:st34;
    nt:statementOrder "190" .
  
  sub:group12 a nt:GroupedStatement, nt:OptionalStatement;
    nt:hasStatement sub:st35, sub:st36, sub:st37;
    nt:statementOrder "200" .
  
  sub:group13 a nt:GroupedStatement;
    nt:hasStatement sub:st13, sub:st14;
    nt:statementOrder "20" .
  
  sub:group14 a nt:GroupedStatement, nt:OptionalStatement, nt:RepeatableStatement;
    nt:hasStatement sub:st39, sub:st40, sub:st41;
    nt:statementOrder "170" .
  
  sub:group15 a nt:GroupedStatement, nt:OptionalStatement;
    nt:hasStatement sub:st17, sub:st18, sub:st42, sub:st43;
    nt:statementOrder "180" .
  
  sub:growthMedium a nt:LocalResource;
    rdfs:label "growth medium" .
  
  sub:host a nt:GuidedChoicePlaceholder;
    nt:possibleValuesFromApi "https://api.catalogueoflife.org/dataset/3LR/nameusage/search?q=" .
  
  sub:identifier a nt:ValuePlaceholder;
    rdfs:label "ORCID URL or full name of the person who identified the microorganism" .
  
  sub:isolator a nt:ValuePlaceholder;
    rdfs:label "ORCID URL or full name of contact person" .
  
  sub:label a nt:LiteralPlaceholder .
  
  sub:mediumDescription a nt:LiteralPlaceholder .
  
  sub:mediumType a nt:RestrictedChoicePlaceholder;
    nt:possibleValue <http://purl.obolibrary.org/obo/MICRO_0000069>, <http://purl.obolibrary.org/obo/MICRO_0000070> .
  
  sub:microorganism a nt:IntroducedResource, nt:LocalResource .
  
  sub:morphology a nt:LongLiteralPlaceholder;
    rdfs:label "describe morphology (e.g. ‘rod-shaped, forms aerial mycelium’)" .
  
  sub:optimalPH a nt:LiteralPlaceholder;
    rdfs:label "enter pH (e.g. '7.4 [pH]')" .
  
  sub:optimalTempMax a nt:LiteralPlaceholder .
  
  sub:optimalTempMin a nt:LiteralPlaceholder .
  
  sub:optimalTemperature a nt:LiteralPlaceholder .
  
  sub:oxygenRequirement a nt:RestrictedChoicePlaceholder;
    rdfs:label "select oxygen requirement (e.g. aerobic, anaerobic)";
    nt:possibleValue <https://w3id.org/mixs/RelToOxygenEnum#aerobe>, <https://w3id.org/mixs/RelToOxygenEnum#anaerobe>,
      <https://w3id.org/mixs/RelToOxygenEnum#microaerophilic> .
  
  sub:pigmentation a nt:LocalResource;
    rdfs:label "pigmentation" .
  
  sub:pigmentationDescription a nt:LongLiteralPlaceholder .
  
  sub:processingHistory a nt:LongLiteralPlaceholder;
    rdfs:label "describe processing steps (e.g. ‘isolated on ISP2, stored at -80 °C in glycerol’)" .
  
  sub:publication a nt:ExternalUriPlaceholder;
    rdfs:label "enter DOI URL" .
  
  sub:sampleSource a nt:ExternalUriPlaceholder .
  
  sub:sporulation a nt:LocalResource;
    rdfs:label "sporulation phenotype" .
  
  sub:sporulationDescription a nt:LongLiteralPlaceholder .
  
  sub:sporulationValue a nt:RestrictedChoicePlaceholder;
    nt:possibleValue <http://purl.obolibrary.org/obo/OMP_0007143>, <http://purl.obolibrary.org/obo/OMP_0007236> .
  
  sub:st10 rdf:object <https://w3id.org/spaces/biodiversity/r/ontology/Microorganism>;
    rdf:predicate rdf:type;
    rdf:subject sub:microorganism .
  
  sub:st11 rdf:object sub:taxon;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName>;
    rdf:subject sub:microorganism .
  
  sub:st12 rdf:object sub:label;
    rdf:predicate rdfs:label;
    rdf:subject sub:microorganism .
  
  sub:st13 a nt:OptionalStatement;
    rdf:object sub:isolator;
    rdf:predicate prov:wasAttributedTo;
    rdf:subject sub:microorganism .
  
  sub:st14 a nt:OptionalStatement;
    rdf:object sub:contactPerson;
    rdf:predicate <https://schema.org/contactPoint>;
    rdf:subject sub:microorganism .
  
  sub:st15 a nt:OptionalStatement;
    rdf:object sub:morphology;
    rdf:predicate <http://purl.jp/bio/10/mpo#MPO_10026>;
    rdf:subject sub:microorganism;
    nt:statementOrder "30" .
  
  sub:st16 a nt:OptionalStatement;
    rdf:object sub:oxygenRequirement;
    rdf:predicate <https://w3id.org/mixs/0000015>;
    rdf:subject sub:microorganism;
    nt:statementOrder "40" .
  
  sub:st17 a nt:OptionalStatement;
    rdf:object sub:storageTemperature;
    rdf:predicate <https://w3id.org/mixs/0000110>;
    rdf:subject sub:microorganism .
  
  sub:st18 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:optimalTemperature;
    rdf:predicate <http://purl.jp/bio/10/mpo#MPO_10008>;
    rdf:subject sub:microorganism .
  
  sub:st19 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:optimalPH;
    rdf:predicate <http://purl.jp/bio/10/mpo#MPO_10004>;
    rdf:subject sub:microorganism;
    nt:statementOrder "50" .
  
  sub:st21 a nt:OptionalStatement;
    rdf:object sub:processingHistory;
    rdf:predicate <https://w3id.org/mixs/0000016>;
    rdf:subject sub:microorganism;
    nt:statementOrder "60" .
  
  sub:st22 a nt:OptionalStatement;
    rdf:object sub:accessionID;
    rdf:predicate dct:identifier;
    rdf:subject sub:microorganism;
    nt:statementOrder "70" .
  
  sub:st23 a nt:OptionalStatement;
    rdf:object sub:genomeAccession;
    rdf:predicate <http://www.wikidata.org/prop/direct/P4333>;
    rdf:subject sub:microorganism;
    nt:statementOrder "80" .
  
  sub:st24 a nt:OptionalStatement;
    rdf:object sub:collection;
    rdf:predicate <http://rs.tdwg.org/dwc/iri/inCollection>;
    rdf:subject sub:microorganism;
    nt:statementOrder "90" .
  
  sub:st25 a nt:OptionalStatement;
    rdf:object sub:publication;
    rdf:predicate <http://purl.org/spar/cito/isDescribedBy>;
    rdf:subject sub:microorganism;
    nt:statementOrder "100" .
  
  sub:st26 a nt:OptionalStatement;
    rdf:object sub:enzymeActivity;
    rdf:predicate <http://purl.obolibrary.org/obo/RO_0002215>;
    rdf:subject sub:microorganism;
    nt:statementOrder "110" .
  
  sub:st28 a nt:OptionalStatement;
    rdf:object sub:host;
    rdf:predicate <http://purl.obolibrary.org/obo/RO_0002556>;
    rdf:subject sub:microorganism;
    nt:statementOrder "120" .
  
  sub:st29 a nt:OptionalStatement;
    rdf:object sub:ecologicalRole;
    rdf:predicate <http://purl.obolibrary.org/obo/RO_0000087>;
    rdf:subject sub:microorganism;
    nt:statementOrder "130" .
  
  sub:st30 a nt:OptionalStatement;
    rdf:object sub:sampleSource;
    rdf:predicate prov:wasDerivedFrom;
    rdf:subject sub:microorganism;
    nt:statementOrder "140" .
  
  sub:st31 a nt:OptionalStatement;
    rdf:object sub:identifier;
    rdf:predicate <http://rs.tdwg.org/dwc/iri/identifiedBy>;
    rdf:subject sub:microorganism;
    nt:statementOrder "150" .
  
  sub:st32 rdf:object sub:sporulation;
    rdf:predicate <http://purl.obolibrary.org/obo/RO_0002200>;
    rdf:subject sub:microorganism .
  
  sub:st33 rdf:object sub:sporulationValue;
    rdf:predicate rdf:type;
    rdf:subject sub:sporulation .
  
  sub:st34 a nt:OptionalStatement;
    rdf:object sub:sporulationDescription;
    rdf:predicate dct:description;
    rdf:subject sub:sporulation .
  
  sub:st35 rdf:object sub:pigmentation;
    rdf:predicate <http://purl.obolibrary.org/obo/RO_0002200>;
    rdf:subject sub:microorganism .
  
  sub:st36 rdf:object <http://purl.obolibrary.org/obo/OMP_0007811>;
    rdf:predicate rdf:type;
    rdf:subject sub:pigmentation .
  
  sub:st37 rdf:object sub:pigmentationDescription;
    rdf:predicate dct:description;
    rdf:subject sub:pigmentation .
  
  sub:st38 a nt:OptionalStatement;
    rdf:object sub:gramStain;
    rdf:predicate <http://purl.obolibrary.org/obo/RO_0002200>;
    rdf:subject sub:microorganism;
    nt:statementOrder "160" .
  
  sub:st39 rdf:object sub:microorganism;
    rdf:predicate <http://purl.obolibrary.org/obo/MICRO_0000472>;
    rdf:subject sub:growthMedium .
  
  sub:st40 rdf:object sub:mediumType;
    rdf:predicate rdf:type;
    rdf:subject sub:growthMedium .
  
  sub:st41 rdf:object sub:mediumDescription;
    rdf:predicate dct:description;
    rdf:subject sub:growthMedium .
  
  sub:st42 a nt:OptionalStatement;
    rdf:object sub:optimalTempMin;
    rdf:predicate <http://purl.jp/bio/10/mpo#MPO_10020>;
    rdf:subject sub:microorganism .
  
  sub:st43 a nt:OptionalStatement;
    rdf:object sub:optimalTempMax;
    rdf:predicate <http://purl.jp/bio/10/mpo#MPO_10021>;
    rdf:subject sub:microorganism .
  
  sub:storageTemperature a nt:LiteralPlaceholder .
  
  sub:taxon a nt:GuidedChoicePlaceholder;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ncbitaxon&q=" .
  
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    dct:description "Allows to describe a microorganism isolated from an environmental or organic sample.";
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    nt:hasTag "naturalProducts" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0001-6534-6609 .
}

sub:pubinfo {
  orcid:0009-0008-9871-6504 foaf:name "Tanja Gesslbauer" .
  
  this: dct:created "2026-11-12T09:52:59.518Z"^^xsd:dateTime;
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    dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
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    rdfs:label "Describing a microorganism";
    skos:changeNote "fixed identifier hint and added input hints with examples for morphology, oxygen requirement, processing history, 16S and genome accessions, culture collection and publication DOI";
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}