Nanopublication

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ID

https://w3id.org/np/RApYduMbawhjUe_Wxu2V6j-FQGRe_B82FjSnTkpDCLucI

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RApYduMbawhjUe_Wxu2V6j-FQGRe_B82FjSnTkpDCLucI> .
@prefix sub: <https://w3id.org/np/RApYduMbawhjUe_Wxu2V6j-FQGRe_B82FjSnTkpDCLucI/> .
@prefix schema: <https://schema.org/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix ex: <https://w3id.org/interactoa-nanopub/terms/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix pav: <http://purl.org/pav/> .
@prefix fabio: <http://purl.org/spar/fabio/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix cito: <http://purl.org/spar/cito/> .

sub:%23Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:%23assertion;
    np:hasProvenance sub:%23provenance;
    np:hasPublicationInfo sub:%23pubinfo .
}

sub:%23assertion {
  ex:PaperOverview skos:prefLabel "Paper overview" .
  
  sub:%23evidence-section-3-2-modelling-small-rna-interaction-data-in-wikidata a schema:CreativeWork;
    rdfs:label "3.2 Modelling small RNA interaction data in Wikidata";
    schema:isPartOf <https://doi.org/10.3233/SW-243685> .
  
  sub:%23evidence-section-3-3-linking-statements-to-articles a schema:CreativeWork;
    rdfs:label "3.3 Linking statements to articles";
    schema:isPartOf <https://doi.org/10.3233/SW-243685> .
  
  sub:%23evidence-section-3-4-system-architecture a schema:CreativeWork;
    rdfs:label "3.4 System architecture";
    schema:isPartOf <https://doi.org/10.3233/SW-243685> .
  
  sub:%23evidence-section-abstract a schema:CreativeWork;
    rdfs:label "Abstract";
    schema:isPartOf <https://doi.org/10.3233/SW-243685> .
  
  sub:%23evidence-section-introduction a schema:CreativeWork;
    rdfs:label "Introduction";
    schema:isPartOf <https://doi.org/10.3233/SW-243685> .
  
  sub:%23paper-overview a schema:Claim, schema:CreativeWork, ex:PaperOverview;
    dct:title "Content overview of the InteractOA paper";
    cito:citesAsEvidence <https://doi.org/10.3233/SW-243685>;
    rdfs:comment "Topic: The paper presents InteractOA, a web application for representing, visualizing, editing and querying literature-derived small-RNA interaction knowledge in Wikidata. Problem: Scientific knowledge is commonly published as unstructured text in articles, which makes it difficult to query, reuse and integrate into knowledge graphs. Approach: The authors use small regulatory RNAs as an example domain and represent small-RNA interaction knowledge from open-access literature as structured Wikidata statements. System: InteractOA acts as a web interface and middle layer between users and Wikidata. It supports visualization, editing and querying of small-RNA interaction information. Data: The implementation imported 776 small-RNA annotations and contributed 253 connections between small RNAs and their targets for Escherichia coli, Vibrio cholerae and Staphylococcus aureus. Contribution: The paper demonstrates how knowledge items from scientific literature can be represented in Wikidata while maintaining links to the exact source article evidence. Relevance: The work contributes to FAIR and machine-readable scholarly communication by making literature-derived knowledge queryable, reusable and provenance-aware.";
    rdfs:label "Paper overview: InteractOA";
    schema:about <https://doi.org/10.3233/SW-243685>;
    schema:abstract "Topic: The paper presents InteractOA, a web application for representing, visualizing, editing and querying literature-derived small-RNA interaction knowledge in Wikidata. Problem: Scientific knowledge is commonly published as unstructured text in articles, which makes it difficult to query, reuse and integrate into knowledge graphs. Approach: The authors use small regulatory RNAs as an example domain and represent small-RNA interaction knowledge from open-access literature as structured Wikidata statements. System: InteractOA acts as a web interface and middle layer between users and Wikidata. It supports visualization, editing and querying of small-RNA interaction information. Data: The implementation imported 776 small-RNA annotations and contributed 253 connections between small RNAs and their targets for Escherichia coli, Vibrio cholerae and Staphylococcus aureus. Contribution: The paper demonstrates how knowledge items from scientific literature can be represented in Wikidata while maintaining links to the exact source article evidence. Relevance: The work contributes to FAIR and machine-readable scholarly communication by making literature-derived knowledge queryable, reusable and provenance-aware.";
    schema:claimReviewed "Topic: The paper presents InteractOA, a web application for representing, visualizing, editing and querying literature-derived small-RNA interaction knowledge in Wikidata. Problem: Scientific knowledge is commonly published as unstructured text in articles, which makes it difficult to query, reuse and integrate into knowledge graphs. Approach: The authors use small regulatory RNAs as an example domain and represent small-RNA interaction knowledge from open-access literature as structured Wikidata statements. System: InteractOA acts as a web interface and middle layer between users and Wikidata. It supports visualization, editing and querying of small-RNA interaction information. Data: The implementation imported 776 small-RNA annotations and contributed 253 connections between small RNAs and their targets for Escherichia coli, Vibrio cholerae and Staphylococcus aureus. Contribution: The paper demonstrates how knowledge items from scientific literature can be represented in Wikidata while maintaining links to the exact source article evidence. Relevance: The work contributes to FAIR and machine-readable scholarly communication by making literature-derived knowledge queryable, reusable and provenance-aware.";
    schema:name "Paper overview: InteractOA";
    ex:approach "The authors use small regulatory RNAs as an example domain and represent small-RNA interaction knowledge from open-access literature as structured Wikidata statements.";
    ex:datasetSummary "The implementation imported 776 small-RNA annotations and contributed 253 connections between small RNAs and their targets for Escherichia coli, Vibrio cholerae and Staphylococcus aureus.";
    ex:hasEvidenceSection sub:%23evidence-section-3-2-modelling-small-rna-interaction-data-in-wikidata,
      sub:%23evidence-section-3-3-linking-statements-to-articles, sub:%23evidence-section-3-4-system-architecture,
      sub:%23evidence-section-abstract, sub:%23evidence-section-introduction;
    ex:mainContribution "The paper demonstrates how knowledge items from scientific literature can be represented in Wikidata while maintaining links to the exact source article evidence.";
    ex:relevance "The work contributes to FAIR and machine-readable scholarly communication by making literature-derived knowledge queryable, reusable and provenance-aware.";
    ex:researchProblem "Scientific knowledge is commonly published as unstructured text in articles, which makes it difficult to query, reuse and integrate into knowledge graphs.";
    ex:reviewStatus "human-reviewed";
    ex:systemDescription "InteractOA acts as a web interface and middle layer between users and Wikidata. It supports visualization, editing and querying of small-RNA interaction information.";
    ex:topic "The paper presents InteractOA, a web application for representing, visualizing, editing and querying literature-derived small-RNA interaction knowledge in Wikidata." .
}

sub:%23provenance {
  <https://doi.org/10.3233/SW-243685> a fabio:JournalArticle;
    dct:identifier "10.3233/SW-243685";
    dct:title "InteractOA: Showcasing the representation of knowledge from scientific literature in Wikidata";
    schema:url <https://journals.sagepub.com/doi/full/10.3233/SW-243685> .
  
  sub:%23assertion prov:wasAttributedTo <https://orcid.org/0009-0002-0728-474X>;
    prov:wasDerivedFrom <https://doi.org/10.3233/SW-243685>;
    prov:wasGeneratedBy sub:%23llm-assisted-overview-curation;
    prov:wasInfluencedBy sub:%23human-review .
  
  sub:%23human-review a prov:Activity;
    rdfs:label "Manual review of paper overview, extracted content blocks and evidence sections";
    prov:wasAssociatedWith <https://orcid.org/0009-0002-0728-474X> .
  
  sub:%23llm-assisted-overview-curation a prov:Activity;
    rdfs:label "LLM-assisted extraction of paper-level content overview";
    prov:generatedAtTime "2026-06-17T12:39:38.174821+00:00"^^xsd:dateTime;
    prov:used <https://doi.org/10.3233/SW-243685> .
}

sub:%23pubinfo {
  this: dct:created "2026-06-17T12:39:38.174821+00:00"^^xsd:dateTime;
    dct:creator <https://orcid.org/0009-0002-0728-474X>;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    dct:subject <https://doi.org/10.3233/SW-243685>;
    npx:hasNanopubType npx:Claim;
    pav:createdBy <https://orcid.org/0009-0002-0728-474X>;
    pav:createdWith <https://codeberg.org/sedatp/Team_A_Nanopubs>;
    rdfs:label "Readable paper overview nanopublication for InteractOA" .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAq6onyfdLnprP5hJXk0mjvCbHvX6jv7T1CrTAW9XMdSZHj6DXTw4f1KpGoFY3qVMy9H2ZcHeV26cCQCbFC7J/nn7FzB8MMbpucows/bdHAf6xf5wQJKdvSySWCf60RPOxstLUjNAMTIg07R0ByUR4t1D+3a0kuZnQUsl49TAbEQFylTt63krqDtz0tnyz2KbvGcvoIpgHbSNbd/2sUb0BCRdnIAqlfngvbBDPx9FvEvpP1ivTKvNtIbsN6VHUhrhMb5akxd4qJ5l8n/cOX2V9tdEU5VNAoEFmAZSqPnoTYe2HI/pip28N7Vu8nwbVyHy4FZ5K80m8GQ52DBn4uKDYzwIDAQAB";
    npx:hasSignature "iRK4RJcK4/WXqcPbluMH4BD7j4RwjLcOFC86kCsGQhMDiGxjt0cn33H5LN4lcPZALfByeKjovuWRriMKhGzAvJLTF+jNZr0kUrZRpy0KUKRMc7TbcCLecElyn3KGb2xT+igzApyfpSvtDrrHaOyTNugZiobjoEEMpjwypIQVabyPJWp9dHuycZ7Js/BgoySCGtnmCWpP+wgWLnwlV3LgtWOPywEsYDk2TjA61Lafdrc9Cxltw8kq8WQ+8JXlpDRzOqPKp276q3yqOBuRjsaJvHTQ/rq/bVerAhQOH6bTXQ3gsKjhypgEfdCSMDg6x/8az1TEba7tS0mKu42k3Fgr0Q==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0002-0728-474X> .
}