Nanopublication

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ID

https://w3id.org/np/RAu51kN9d2eynFwXPNBAp9ILWC8Jz6mY0f3P4G82AEdjQ

Formats

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Content

@prefix this: <https://w3id.org/np/RAu51kN9d2eynFwXPNBAp9ILWC8Jz6mY0f3P4G82AEdjQ> .
@prefix sub: <https://w3id.org/np/RAu51kN9d2eynFwXPNBAp9ILWC8Jz6mY0f3P4G82AEdjQ/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix cito: <http://purl.org/spar/cito/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:graphite-match-reduction a obo:ECO_0000000, obo:ECO_0007672;
    dct:description "Querying 86 Campylobacter coli genomes against 490 other Campylobacter genomes, Graphite reported 566,097 locally maximal exact matches of at least 31 nucleotides in 0.04 GB of output, against 126,946,345 matches (9.20 GB) for E-MEM, 108,719,433 (4.40 GB) for bfMEM and 55,016,810 (2.20 GB) for CopMEM2 — a reduction of more than thirtyfold.";
    cito:isDocumentedBy <https://doi.org/10.1093/nargab/lqae142>;
    rdfs:label "Match reduction results against three exact-match tools";
    prov:wasGeneratedBy <https://w3id.org/np/RAW2eqpYko0g-C5Pnv4bsmGZHGM7PDKljapa4oqcD4i18/graphite-development> .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-0758-5190, orcid:0000-0002-9496-733X,
      orcid:0000-0003-2329-7890, orcid:0009-0004-6984-1294;
    prov:wasDerivedFrom <https://doi.org/10.1093/nargab/lqae142> .
}

sub:pubinfo {
  obo:ECO_0000000 rdfs:label "evidence" .
  
  obo:ECO_0007672 rdfs:label "computational evidence" .
  
  orcid:0000-0002-0758-5190 foaf:name "Aldert L. Zomer" .
  
  orcid:0000-0002-9496-733X foaf:name "Sebastian Deorowicz" .
  
  orcid:0000-0003-2329-7890 foaf:name "Bas E. Dutilh" .
  
  orcid:0009-0004-6984-1294 foaf:name "Rick Beeloo" .
  
  this: dct:created "2026-09-07T11:25:11Z"^^xsd:dateTime;
    dct:creator <https://w3id.org/np/RAuTlT6ESRHfYrofQSuAQtOHeF6BanRUXJc6eY9kEH5UM/zonmw-bot>;
    dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
    npx:hasNanopubType obo:ECO_0000000;
    npx:introduces sub:graphite-match-reduction;
    rdfs:label "Evidence: Match reduction results against three exact-match tools";
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      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>, <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
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}