@prefix this: <https://w3id.org/np/RAxFeS0GLdhKq-XyCfzP6Rw6zNfWruHG-WLdPIZLnYAZo> .
@prefix sub: <https://w3id.org/np/RAxFeS0GLdhKq-XyCfzP6Rw6zNfWruHG-WLdPIZLnYAZo/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix grlc: <https://w3id.org/kpxl/grlc/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:get-fip-declared-fsrs a grlc:grlc-query;
    dct:description "For a FAIR Implementation Profile (FIP) or reference FIP (rFIP), lists the FAIR Supporting Resources (FSRs) it declares, ordered like the FIP itself: by FAIR principle in FIP order (F1, F2, F3, F4, A1.1, A1.2, A2, I1, I2, I3, R1.1, R1.2), then the supplementary \"S\" questions (FIP-S-Question-*, answered by FIP-Supporting-Declaration and FIP-No-Choice-Supporting-Declaration nanopublications) in a fixed order, and then by resource. One row per FSR and FIP question; the data and metadata variants of a question are merged, with the scope column telling whether the FSR was declared for metadata, data or both (empty for the S questions, which have no such variants). Columns: the FIP question as a group header (principle code and the question text as in the FIP Wizard, with \"data / metadata\" where the two variants differ, and the I2 question worded as its metadata variant so that both variants share one header; for an S question \"S:\" followed by the question name derived from its identifier and, if the question term is introduced by a nanopublication with a skos:definition, that definition; the question_group column is rendered by Nanodash as a header row above the rows of that question), the FSR (labelled from its metadata nanopublication, or by its identifier), its FSR types, scope, the kind of use (current use, planned use, planned replacement), and the declaration nanopublication. A plain FIP is resolved through its declaration index. A reference FIP (rFIP) is always resolved through the recommendation nanopublications of its community instead (nanopublication type fip:recommended-by, one FSR each), whether or not it carries a declaration index: those published from the same FIP Wizard project as the profile nanopublication, which is what ties the generations of one rFIP together - it keeps the ones published before the Wizard started linking each recommendation to the rFIP nanopublication, and leaves out recommendations the same community made in a different Wizard project. Where no recommendation of the community comes from a Wizard project at all, all of its current recommendations are shown. Such a recommendation carries neither a FIP question nor a use property, so its row has no question header, an empty scope, and \"recommended\" as its use. A plain FIP without an index falls back to the declarations of the same community: those carrying the FIP's own version (ignoring a leading \"v\"), or else the declarations of the most recently published version. This version resolves every rFIP through its recommendations. The previous versions answered an rFIP without an index with the community's whole FIP - 45 current-use FSRs rather than the 3 recommended ones for PARC Toxicology - and an rFIP with an index with the FIP-style declarations that index aggregates, which for the Reference Adverse Outcome Pathways FIP listed the same 7 resources as \"current use\" under their FIP questions.";
    dct:license <http://www.apache.org/licenses/LICENSE-2.0>;
    rdfs:label "Get the FSRs declared in a FIP";
    grlc:endpoint <https://w3id.org/np/l/nanopub-query-1.1/repo/full>;
    grlc:sparql """prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>
prefix xsd: <http://www.w3.org/2001/XMLSchema#>
prefix dct: <http://purl.org/dc/terms/>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix foaf: <http://xmlns.com/foaf/0.1/>
prefix prov: <http://www.w3.org/ns/prov#>
prefix skos: <http://www.w3.org/2004/02/skos/core#>
prefix schema: <https://schema.org/>
prefix gen: <https://w3id.org/kpxl/gen/terms/>
prefix fip: <https://w3id.org/fair/fip/terms/>
prefix tpff: <https://w3id.org/fair/3pff/>
prefix search: <http://www.openrdf.org/contrib/lucenesail#>

select ?question_group ?fsr ?fsr_label ?types_multi_iri ?types_label_multi ?scope ?use ?np ?np_label where {
{ select ?principle (coalesce(concat(min(?qbase), \": \", min(?qtext)), \"\") as ?question_group)
  ?fsr (coalesce(min(?fsr_label_x), replace(str(?fsr), \"^.*[/#]\", \"\")) as ?fsr_label)
  (group_concat(distinct str(?type); separator=\" \") as ?types_multi_iri) (group_concat(distinct ?type_label; separator=\"\\n\") as ?types_label_multi)
  (coalesce(if(max(?isMD) = 1 && max(?isD) = 1, \"Metadata, Data\", if(max(?isMD) = 1, \"Metadata\", if(max(?isD) = 1, \"Data\", \"\"))), \"\") as ?scope)
  (group_concat(distinct ?use; separator=\", \") as ?use)
  (min(?dnp) as ?np) (\"^\" as ?np_label) (min(?sortkey) as ?sk)
where {
  graph npa:graph {
    ?fipnp npx:introduces ?_fip_iri ; np:hasAssertion ?fa ; npa:hasValidSignatureForPublicKey ?fpk .
    filter not exists { ?fx npx:invalidates ?fipnp ; npa:hasValidSignatureForPublicKey ?fpk . }
  }
  graph ?fa { ?_fip_iri fip:declared-by ?community . optional { ?_fip_iri schema:version|<http://schema.org/version> ?version . } }
  {
    graph ?fa {
      ?_fip_iri fip:has-declaration-index ?index .
      filter not exists { ?_fip_iri a fip:Reference-FAIR-Implementation-Profile . }
    }
    graph npa:networkGraph { ?index npx:includesElement ?dnp . }
    graph npa:graph { ?dnp np:hasAssertion ?da . }
    values (?useProp ?use) {
      (fip:declares-current-use-of \"current use\")
      (fip:declares-planned-use-of \"planned use\")
      (fip:declares-planned-replacement-of \"planned replacement\")
      (fip:declares-replacement-from \"replacement from\")
      (fip:declares-replacement-to \"replacement to\")
    }
    graph ?da {
      ?decl fip:refers-to-question ?question ; ?useProp ?fsr .
    }
    graph npa:graph {
      ?dnp npx:hasNanopubType ?dtype ; npa:hasValidSignatureForPublicKey ?dpk .
      filter(?dtype in (fip:FIP-Declaration, fip:FIP-Supporting-Declaration, fip:FIP-No-Choice-Supporting-Declaration))
      filter not exists { ?dx npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKey ?dpk . }
    }
  } union {
    graph ?fa { ?_fip_iri a fip:Reference-FAIR-Implementation-Profile . }
    graph npa:graph { ?fipnp np:hasPublicationInfo ?fpi . }
    graph ?fpi { ?fipnp prov:wasDerivedFrom ?project . }
    filter(strstarts(str(?project), \"https://w3id.org/fip/wizard/\"))
    graph npa:graph {
      ?dnp npx:hasNanopubType fip:recommended-by ; np:hasAssertion ?da ; np:hasPublicationInfo ?dpi ;
        npa:hasValidSignatureForPublicKey ?dpk .
      filter not exists { ?dx npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKey ?dpk . }
    }
    graph ?dpi { ?dnp prov:wasDerivedFrom ?project . }
    graph ?da { ?fsr fip:recommended-by ?community . }
    bind(\"recommended\" as ?use)
  } union {
    graph ?fa { ?_fip_iri a fip:Reference-FAIR-Implementation-Profile . }
    graph npa:graph {
      ?dnp npx:hasNanopubType fip:recommended-by ; np:hasAssertion ?da ;
        npa:hasValidSignatureForPublicKey ?dpk .
      filter not exists { ?dx npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKey ?dpk . }
    }
    graph ?da { ?fsr fip:recommended-by ?community . }
    filter not exists {
      graph npa:graph { ?onp npx:hasNanopubType fip:recommended-by ; np:hasAssertion ?oa ; np:hasPublicationInfo ?opi . }
      graph ?oa { ?ofsr fip:recommended-by ?community . }
      graph ?opi { ?onp prov:wasDerivedFrom ?oproj . }
      filter(strstarts(str(?oproj), \"https://w3id.org/fip/wizard/\"))
    }
    bind(\"recommended\" as ?use)
  } union {
    graph ?fa {
      filter not exists { ?_fip_iri fip:has-declaration-index ?ix . }
      filter not exists { ?_fip_iri a fip:Reference-FAIR-Implementation-Profile . }
    }
    {
      select ?community (?dvC as ?chosenRawVersion) where {
        graph npa:graph { ?fnpB npx:introduces ?_fip_iri ; np:hasAssertion ?faB . }
        graph ?faB {
          ?_fip_iri fip:declared-by ?community .
          optional { ?_fip_iri schema:version|<http://schema.org/version> ?vB . }
        }
        bind(replace(str(coalesce(?vB, \"\")), \"^[vV][.]?\", \"\") as ?nverB)
        graph ?daC { ?declC fip:declared-by ?community ; schema:version|<http://schema.org/version> ?dvC . }
        graph npa:graph { ?dnpC np:hasAssertion ?daC ; npx:hasNanopubType fip:FIP-Declaration ; dct:created ?dtC . }
        bind(if(replace(str(?dvC), \"^[vV][.]?\", \"\") = ?nverB, 0, 1) as ?pref)
      } order by ?pref desc(?dtC) limit 1
    }
    graph ?da0 { ?decl0 fip:declared-by ?community ; schema:version|<http://schema.org/version> ?chosenRawVersion . }
    graph npa:graph { ?dnp np:hasAssertion ?da0 . }
    graph npa:graph { ?dnp np:hasAssertion ?da . }
    values (?useProp ?use) {
      (fip:declares-current-use-of \"current use\")
      (fip:declares-planned-use-of \"planned use\")
      (fip:declares-planned-replacement-of \"planned replacement\")
      (fip:declares-replacement-from \"replacement from\")
      (fip:declares-replacement-to \"replacement to\")
    }
    graph ?da {
      ?decl fip:refers-to-question ?question ; ?useProp ?fsr .
    }
    graph npa:graph {
      ?dnp npx:hasNanopubType ?dtype ; npa:hasValidSignatureForPublicKey ?dpk .
      filter(?dtype in (fip:FIP-Declaration, fip:FIP-Supporting-Declaration, fip:FIP-No-Choice-Supporting-Declaration))
      filter not exists { ?dx npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKey ?dpk . }
    }
  }
  bind(coalesce(?question, fip:FIP-Question-NONE) as ?quest)
  bind(strstarts(str(?quest), \"https://w3id.org/fair/fip/terms/FIP-S-Question-\") as ?isS)
  bind(replace(str(?quest), \"^.*FIP-(S-)?Question-\", \"\") as ?qcode)
  bind(if(?isS, \"S\", replace(?qcode, \"-(MD|D)$\", \"\")) as ?qbase)
  bind(if(!?isS && strends(?qcode, \"-MD\"), 1, 0) as ?isMD)
  bind(if(!?isS && strends(?qcode, \"-D\"), 1, 0) as ?isD)
  bind(if(?isS, ?quest, iri(concat(\"https://w3id.org/fair/principles/terms/\", ?qbase))) as ?principle)
  optional {
    graph npa:graph { ?qnp npx:introduces ?quest ; np:hasAssertion ?qa . }
    graph ?qa { ?quest skos:definition ?qdef . }
  }
  bind(replace(replace(replace(replace(?qdef, \" for datasets\", \" for data / metadata\"), \" your datasets\", \" your data / metadata\"), \"(for|annotate|your) metadata records\", \"$1 data / metadata\"), \"to encode your data / metadata\", \"to annotate your data / metadata\") as ?qtextDef)
  bind(replace(?qcode, \"-\", \" \") as ?qname)
  bind(if(?isS, if(bound(?qtextDef), concat(?qname, \" – \", ?qtextDef), ?qname), ?qtextDef) as ?qtext)
  bind(if(?isS, concat(\"5\", lcase(?qcode)), concat(replace(replace(replace(replace(substr(?qbase, 1, 1), \"F\", \"1\"), \"A\", \"2\"), \"I\", \"3\"), \"R\", \"4\"), ?qbase)) as ?sortkey)
  optional {
    values ?p { npx:introduces npx:describes }
    graph npa:graph {
      ?fsrnp ?p ?fsr ; rdfs:label ?fsr_label_x ; npx:hasNanopubType ?sft ; npa:hasValidSignatureForPublicKey ?spk .
      values ?sft { fip:FAIR-Enabling-Resource fip:FAIR-Supporting-Resource }
      filter not exists { ?sx npx:invalidates ?fsrnp ; npa:hasValidSignatureForPublicKey ?spk . }
    }
    optional {
      graph npa:graph { ?fsrnp npx:hasNanopubType ?type . }
      filter(strstarts(str(?type), \"https://w3id.org/fair/fip/terms/\"))
      filter(?type not in (fip:FAIR-Enabling-Resource, fip:FAIR-Supporting-Resource, fip:Available-FAIR-Enabling-Resource, fip:Available-FAIR-Supporting-Resource, fip:FAIR-Enabling-Resource-to-be-Developed, fip:FAIR-Supporting-Resource-to-be-Developed))
      bind(replace(replace(str(?type), \"^.*/\", \"\"), \"-\", \" \") as ?type_label)
    }
  }
} group by ?principle ?fsr }
} order by ?sk ?fsr_label
""" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  orcid:0000-0002-1267-0234 foaf:name "Tobias Kuhn" .
  
  this: dct:created "2026-10-16T07:09:26Z"^^xsd:dateTime;
    dct:creator <https://w3id.org/np/RAlgF8um78nQxxJhJTNMZ3tpWJOntfTULJWMWr5Fmo4zU/fairimpl-bot>;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:embeds sub:get-fip-declared-fsrs;
    npx:supersedes <https://w3id.org/np/RAsy4Mu8HtU3MbYE-OgALh0PaQxiYLe4OmlWAPY_ghbHU>;
    rdfs:label "Get the FSRs declared in a FIP";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
      <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAzZAkv4Mu1YSUxQMriBnhYunqosX5wpuQ3FjUyzW8wTC51wjCmhsChyhS+mCx7Od+2MTDpdhxDWA+pH1r9AX508X2rIY/sbpMS+pd56e0qKPQ0t4folln1TgamPN9iOlY/yLc2x27AdipWIGXUdtL2iAcb+P/Y5dQS2AkHMS3lP2e5JBL5/bD/10qvTLKvdsqIKts8qjuLpxr9CFbsS2gLjMkXL5D2IsJ0cL5sgmIfS1inLVxIfXrS/OgqYNFqeNznUYCVWfo0g7DKjnjiICz3omeQeJFLYwlJ6PhUhYDQS6O318DGwUCwhnuXbBbwL9evZa2I/0Pwu5xpZdNLYJ5UwIDAQAB";
    npx:hasSignature "Cjma6eoNmaEQTB/O5QHtbqRt82DFJ51EoWPb4Upj8Kp8YByxbHz0Cbi+xermQZez/EcFmuTTJvc0M7W+MPzc9GOVBiyjH1OTwAx/0wnw/V5SDPa1Idpur5opDKJIvfHU/BLcg3BOWIwcbAdNE31XKqrSJjABWDtJSPFC/iCRDwEcDIsNHzZebfHmDLuKscUTcjoDbtuzGLH2pXN0nPzMXGw05ZxIcnFqzDmzkgewZ8jKMUEvJs7G9eEfvoZliU+TiEWF6qtmqC+BhXmszV+HgMYt0jN1RpbYTkeNrt4Gj8qMTiUdKlJpWDfAh6h9/N8hldfWdXOBPYYVEQcZZz3I9g==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://w3id.org/np/RAlgF8um78nQxxJhJTNMZ3tpWJOntfTULJWMWr5Fmo4zU/fairimpl-bot> .
}