Nanopublication

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ID

https://w3id.org/np/RA6S9HAF--pnx09LJoTJTUBn2MwJ1ENXfBsL3ERA3zOW4

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

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@prefix sub: <https://w3id.org/np/RA6S9HAF--pnx09LJoTJTUBn2MwJ1ENXfBsL3ERA3zOW4/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix cito: <http://purl.org/spar/cito/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:graphite-runtime-benchmark a obo:ECO_0000000, obo:ECO_0007672;
    dct:description "On the Campylobacter benchmark Graphite ran in 8 minutes 57 seconds on one thread and 3 minutes 27 seconds on 20 threads, using 3.38 to 4.86 GB of memory, against 10 minutes 16 seconds and 9.63 GB for E-MEM and 34 minutes 22 seconds and over 15 GB for bfMEM. On a human versus mouse comparison Graphite reported 4,169,580 matches in 0.20 GB, against 1,849,841,302 matches in 49 GB for CopMEM2.";
    cito:isDocumentedBy <https://doi.org/10.1093/nargab/lqae142>;
    rdfs:label "Runtime and memory benchmark results";
    prov:wasGeneratedBy <https://w3id.org/np/RAW2eqpYko0g-C5Pnv4bsmGZHGM7PDKljapa4oqcD4i18/graphite-development> .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-0758-5190, orcid:0000-0002-9496-733X,
      orcid:0000-0003-2329-7890, orcid:0009-0004-6984-1294;
    prov:wasDerivedFrom <https://doi.org/10.1093/nargab/lqae142> .
}

sub:pubinfo {
  obo:ECO_0000000 rdfs:label "evidence" .
  
  obo:ECO_0007672 rdfs:label "computational evidence" .
  
  orcid:0000-0002-0758-5190 foaf:name "Aldert L. Zomer" .
  
  orcid:0000-0002-9496-733X foaf:name "Sebastian Deorowicz" .
  
  orcid:0000-0003-2329-7890 foaf:name "Bas E. Dutilh" .
  
  orcid:0009-0004-6984-1294 foaf:name "Rick Beeloo" .
  
  this: dct:created "2026-09-07T11:25:11Z"^^xsd:dateTime;
    dct:creator <https://w3id.org/np/RAuTlT6ESRHfYrofQSuAQtOHeF6BanRUXJc6eY9kEH5UM/zonmw-bot>;
    dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
    npx:hasNanopubType obo:ECO_0000000;
    npx:introduces sub:graphite-runtime-benchmark;
    rdfs:label "Evidence: Runtime and memory benchmark results";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RAefFjYMSnydcZtTqdT8TG8rJeJa76ryG7h10VHQiWKgY>;
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      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>, <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
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}