Nanopublication

ID

https://w3id.org/np/RAjNIW4tx-TtxqGbSjtAdGlvbJ0koEOF3uuOgW6rzGKm4
Formats

Content

@prefix this: <https://w3id.org/np/RAjNIW4tx-TtxqGbSjtAdGlvbJ0koEOF3uuOgW6rzGKm4> .
@prefix sub: <https://w3id.org/np/RAjNIW4tx-TtxqGbSjtAdGlvbJ0koEOF3uuOgW6rzGKm4/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix mvikg: <http://example.org/mvikg/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sosa: <http://www.w3.org/ns/sosa/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/np/RAGrrZrq4c4XMT6ddU9tolMzTRrrtB-FwKHF6dgqt6OQM/variant> a <http://purl.obolibrary.org/obo/SO_0000159>,
      biolink:SequenceVariant;
    mvikg:effect "downregulates TTSS-1, SPI4, and flagellum/chemotaxis genes; loss of suppression of plant oxidative burst/pH response; no necrosis induced";
    mvikg:evidenceText "The immune attenuated mutant of S. Typhimurium DeltarfaH down regulates the expression of the TTSS-1 and SPI4 genes and the flagellum/chemotaxis system";
    dct:isPartOf <https://w3id.org/spaces/mvikg/r/kg>;
    rdfs:comment "VAR_002";
    rdfs:label "PMC3082535-S._Typhimurium_DeltarfaH_mutant-variant1" .
  
  <https://www.uniprot.org/uniprot/A0A0H3NJR3> a biolink:Gene;
    sosa:isFeatureOfInterestOf <https://w3id.org/np/RALMsaq2bChjm1MXTVvg_C-b3-_Tblua6CbDTe-SthkLE/sample>;
    biolink:has_sequence_variant <https://w3id.org/np/RAGrrZrq4c4XMT6ddU9tolMzTRrrtB-FwKHF6dgqt6OQM/variant> .
}

sub:provenance {
  sub:assertion prov:wasDerivedFrom <https://w3id.org/mvikg/abox#VARIANT-VAR_002-A0A0H3NJR3> .
}

sub:pubinfo {
  this: dct:created "2026-11-10T10:29:01Z"^^xsd:dateTime;
    dct:creator orcid:0009-0005-5515-1230;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType npx:ExampleNanopub;
    npx:introduces <https://w3id.org/np/RAGrrZrq4c4XMT6ddU9tolMzTRrrtB-FwKHF6dgqt6OQM/variant>;
    npx:supersedes <https://w3id.org/np/RAGrrZrq4c4XMT6ddU9tolMzTRrrtB-FwKHF6dgqt6OQM>;
    skos:changeNote "Corrected the nt:wasCreatedFromProvenanceTemplate/PubinfoTemplate links, which previously pointed at the meta-templates used to define templates rather than the actual provenance/pubinfo templates used to create this nanopub. Also stabilized npx:introduces to this record's originally published resource IRI so repeated corrections resolve to one current version instead of appearing as unrelated records.";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RAHKGU7g81YLKWl0S7g0oKdiRD5LhcPFMjVkAgLnipR_g>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA-N4_kFxcruvBTlo1yJv29E4SLOXsx5KO_th69PprMrA>,
      <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>, <https://w3id.org/np/RAKc76yHLDbloE6ObluzYQsfX37v6qrZXbYeIKpe8-YUo>,
      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAnlONjGChImRjDeXxTwrTmndhfv1guES7EnXlp1CaE3g/templateVersion> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAjO3oH8Lq/l1oZIUY3FlCz5DnndybGvAhBdmEJ/yq7Nv3GZEYPrEro23rCBCp0GiriOXlVbk61pA/7JFE6tqzTresINW6QQMxE9sIhCBlX4cG66JFD8ud6bMvUyzCR8LQA6zfrSbafGE06rvglJd4MDUcTwvUKqtL9UCnOaowVfnZ3sPOe9EqlmJuO3iHGxBSXMPOPEJZUzMXsFDWFuMZTnrR8gY3r5nVF5a8L/MD135ZH8qW5yGXOB28CmVYCAbw2o07QEKzyzFKN+W1gfnprYZvuKzwGexnzcdzc1S8N/M5bzhWQ40EKCEqgUE8c81OzEMm1HUlUKEJ/o5I/FKKAwIDAQAB";
    npx:hasSignature "NGgk01nGv9Tg/jY6RLP9qs5x4qqskO0BUxhFJB95QPeiOwq0QKBmjqVHlDAs53bqlEj55Yo5wrJNzKi492Iu/EepYrOWsHNtav5iS6kNp21/PpNLuhI+V3pWb5BPU84MuBkQ/HJhvBvUlckyDnwxwdOWg+iq86NJMxysQ4tuCpQVhP1ftRprB3Oz6XoHDA3WBl/Q7D2fMHcFQUpHLWlnAycll1OtBGak/0edoP+LPGGVKrLbfcGCCjNsokZVGHDm4Mrc6uZLBuvzL7Xwo6hdltr00DrKd0GkcrB88zYNwUtHxbxfMBrIWLxdUP0UnIOdddVc0fA1bH7F1Mgdnkf9rg==";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0009-0005-5515-1230 .
}