https://w3id.org/sciencelive/np/RAsGeFqqv4iQqrFNyjQwpSqKQYYk8JqGEjpCCJf1FtAM4
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
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sub:Head {
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np:hasPublicationInfo sub:pubinfo .
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sub:assertion {
sub:soroye2020-iberian-bombus-healpix-nside128-substrate-extension a <https://w3id.org/sciencelive/o/terms/FORRT-Replication-Study>,
<https://w3id.org/sciencelive/o/terms/Replication-Study>;
<http://www.w3.org/2000/01/rdf-schema#label> "TEI mechanism — HEALPix nside=128 substrate extension on Iberian Bombus (full GLMM refit at native DestinE Climate DT pixelisation)";
<http://www.w3.org/2004/02/skos/core#related> <http://www.wikidata.org/entity/Q125928>,
<http://www.wikidata.org/entity/Q2922293>, <http://www.wikidata.org/entity/Q5629401>;
<https://w3id.org/sciencelive/o/terms/hasDeviationDescription> """1. Pixelisation. Soroye 2020 fit at the CEA grid (~100 km, equal-area cylindrical). This Study fits at HEALPix-NESTED nside=128 on the WGS84 ellipsoid (~46 km). Cell area is ~4× smaller than Soroye's; cell shape and topology differ. This is the SAME deviation kind as the canonical nside=64 sibling, just at a finer resolution.
2. Region. Iberian peninsula only — same as the canonical sibling.
3. Inference engine. Two independent Python implementations (statsmodels VB, bambi/PyMC NUTS) — same as the canonical sibling.
4. Prior choices. Bambi defaults (Half-StudentT on group SDs) rather than Soroye's MCMCglmm informative inverse-Wishart — same deviation as the canonical sibling.
5. Climate inputs. Soroye's bundled CRU TS 3.24.01 from his Figshare deposit, used unchanged — NOT a deviation.
6. Tier 2 projection grid alignment. Unlike the canonical nside=64 sibling, this Study fits AND projects at the same native HEALPix nside=128 substrate — no parent-cell aggregation between fit and projection grids. This eliminates one source of cross-substrate aggregation noise but introduces a finer-grained per-cell extrapolation tail (more cells lie far outside the training distribution per species).""";
<https://w3id.org/sciencelive/o/terms/hasDiscipline> <http://www.wikidata.org/entity/Q1886501>;
<https://w3id.org/sciencelive/o/terms/hasMethodologyDescription> """METHOD
The methodology mirrors the canonical nside=64 sibling exactly except for the spatial substrate. Cell coverage and per-species niche limits are computed on HEALPix-NESTED nside=128 cells of the WGS84 ellipsoid (using the healpix-geo Python library); per-species niche limits and the GLMM are refit at this substrate.
GLMM specification (identical to Soroye 2020 and to the canonical sibling):
extinction ~ continent + sc_sampling + sc_TEI_bs + sc_TEI_delta + sc_TEI_bs:sc_TEI_delta + sc_PEI_bs + sc_PEI_delta + sc_PEI_bs:sc_PEI_delta + sc_TEI_bs:sc_PEI_bs + sc_TEI_delta:sc_PEI_delta + (1|species)
Inference: variational-Bayes via statsmodels.BinomialBayesMixedGLM (fast first pass) and full-posterior NUTS via bambi/PyMC, 4 chains × 2000 samples (authoritative HDIs).
Tier 2 — SSP3-7.0 future projection. DestinE Climate DT IFS-NEMO standard SSP3-7.0 GRIB files retrieved via polytope on LUMI for the 2020–2029 and 2030–2039 horizons, decoded with eccodes (Python API, NESTED-aware), subset to pre-computed Iberian HEALPix nside=128 cells. The future-period TEI_delta and PEI_delta are computed on the SAME substrate the GLMM was fit on (no cross-substrate aggregation step). Per-species ranking is reported following the protocol established in the methodological sibling chain (n_cells ≥ 10, main-effects-only η at projection time).""";
<https://w3id.org/sciencelive/o/terms/hasScopeDescription> """SCOPE: the GLMM coefficient on standardised TEI_delta at HEALPix nside=128 (the native pixelisation of DestinE Climate DT IFS-NEMO standard), Iberian Bombus only.
IN SCOPE
- Soroye 2020's GLMM specification (identical to the canonical nside=64 sibling).
- Soroye 2020's CRU TS 3.24.01 climate inputs (identical, kept unchanged).
- HEALPix-NESTED nside=128 on the WGS84 ellipsoid (~46 km cells; the native DestinE Climate DT pixelisation).
- Tier 1 historical fit on the 1901–1974 baseline period and 2000–2014 recent period.
- Tier 2 SSP3-7.0 future projection at substrate-matched nside=128 (no parent-aggregation deviation between fit and projection grids).
OUT OF SCOPE for this Replication Study (handled by separate chains)
- The canonical CEA + nside=64 substrate-comparison at coarser resolution — see weatherxbiodiversity-projection.
- Cross-substrate methodological diagnostic — see weatherxbiodiversity-substrate-sensitivity.
- Bombus species outside the Iberian peninsula.""";
<https://w3id.org/sciencelive/o/terms/targetsClaim> <https://w3id.org/sciencelive/np/RAh7NYjme8dajwxnoBfbOjsd1L76LQfN-pMEajIwiRDJE/soroye2020-tei-delta-positive-iberia-nside64> .
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sub:pubinfo {
<https://orcid.org/0000-0002-1784-2920> <http://xmlns.com/foaf/0.1/name> "Anne Fouilloux" .
this: dc:created "2026-05-11T19:28:01.754Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0000-0002-1784-2920>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
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